PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG032885.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 306aa    MW: 34196.4 Da    PI: 8.9492
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG032885.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.23.4e-172774148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEdell++++++ G g+W+t + + g+ R++k+c++rw +yl
      CCG032885.1 27 KGPWTPEEDELLANYIRKEGEGRWRTLPMRAGLLRCGKSCRLRWMNYL 74
                     79******************************99************97 PP
2Myb_DNA-binding46.86.8e-1580124147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rgr  ++E++l+++++++lG++ W++Ia +++ gRt++++k++w++ 
      CCG032885.1  80 RGRIAPDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTC 124
                      678889****************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-211876IPR009057Homeodomain-like
PROSITE profilePS5129416.3992274IPR017930Myb domain
SuperFamilySSF466891.17E-2824121IPR009057Homeodomain-like
SMARTSM007173.6E-132676IPR001005SANT/Myb domain
PfamPF002493.6E-152774IPR001005SANT/Myb domain
CDDcd001679.50E-112974No hitNo description
PROSITE profilePS5129424.03675129IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.7E-2477130IPR009057Homeodomain-like
SMARTSM007173.1E-1379127IPR001005SANT/Myb domain
PfamPF002492.2E-1381124IPR001005SANT/Myb domain
CDDcd001671.78E-1085123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MRNLSSTTST RSRSVPTPCC SKVGIKKGPW TPEEDELLAN YIRKEGEGRW RTLPMRAGLL  60
RCGKSCRLRW MNYLRPSVKR GRIAPDEEDL ILRLHRLLGN RWSLIAGRIP GRTDNEIKNY  120
WNTCLSKKLI SQGLDPRTHK PLKPNPDSSE IANVPVQNSN PKSSPLDENG KVYRTVATRV  180
SENFTVTNLD QYPNHVAADA TENWPHSDGF KMGSLQSGSG RKNEDDFIED IGNEDTFSSF  240
LDSLLNENVF VYQQQQQLQQ QNMFGPSSKL AVSSSQIISH ANIWEAEVSP PMAALGDKGV  300
GGASNI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25271297108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011021466.10.0PREDICTED: transcription repressor MYB5-like
SwissprotQ388504e-78MYB5_ARATH; Transcription repressor MYB5
TrEMBLU5FED70.0U5FED7_POPTR; Uncharacterized protein
STRINGPOPTR_0019s05210.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38943064
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.17e-80myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]