PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG032871.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NAC

Protein Properties

Length: 171aa MW: 19332 Da PI: 4.5293

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG032871.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	80.5	3.5e-25	14	136	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk.dkevlsk 95 +G+rF Ptd++lvv+yLk+k+ g++l+ ++i+++d+y + P +Lp ++ + ++ew+fFs+++k +++ gy + +++ CCG032871.1 14 VAGYRFCPTDDDLVVYYLKRKILGEQLPG-NIIPTTDVYASSPDKLPlGlfRM-GMDNEWFFFSTKSKDD-----DITVVDGGYYEIDPDgAAPITW- 103 58*************************.89***********534444.3578***98864.....4557889999955442677877. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +g+ vg ktL f +g+ p+g++t+W+++e+r+ CCG032871.1 104 EGKIVGHVKTLFFCRGSPPNGTETEWMVEEFRV 136 999**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.24E-32	10	164	IPR003441	NAC domain
PROSITE profile	PS51005	30.435	13	165	IPR003441	NAC domain
Pfam	PF02365	8.2E-15	15	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MSSGEQVLAV PAVVAGYRFC PTDDDLVVYY LKRKILGEQL PGNIIPTTDV YASSPDKLPL 60 GLFRMGMDNE WFFFSTKSKD DDITVVDGGY YEIDPDGAAP ITWEGKIVGH VKTLFFCRGS 120 PPNGTETEWM VEEFRVNPEF FPVDKADHTT QEKITNLVVC KIYRMRPPPE R

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-16	16	171	20	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-16	16	171	20	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-16	16	171	20	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-16	16	171	20	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-16	16	171	23	174	NAC domain-containing protein 19
3swm_B	2e-16	16	171	23	174	NAC domain-containing protein 19
3swm_C	2e-16	16	171	23	174	NAC domain-containing protein 19
3swm_D	2e-16	16	171	23	174	NAC domain-containing protein 19
3swp_A	2e-16	16	171	23	174	NAC domain-containing protein 19
3swp_B	2e-16	16	171	23	174	NAC domain-containing protein 19
3swp_C	2e-16	16	171	23	174	NAC domain-containing protein 19
3swp_D	2e-16	16	171	23	174	NAC domain-containing protein 19
4dul_A	2e-16	16	171	20	171	NAC domain-containing protein 19
4dul_B	2e-16	16	171	20	171	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011011746.1	1e-125	PREDICTED: NAC domain-containing protein 86-like
TrEMBL	A0A2K2ATE1	1e-102	A0A2K2ATE1_POPTR; Uncharacterized protein
STRING	POPTR_0004s11840.1	1e-90	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14452	7	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17260.1	7e-23	NAC domain containing protein 86