PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG032794.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 669aa    MW: 75596.3 Da    PI: 5.8142
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG032794.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.71.6e-5561331128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                  lppGfrFhPtdeelv +yL++k++++k+el e+i+evd+yk+ePwdLp k  + +++ ewyfFs+rd+ky++g+r+nratk+gyWkatgkd++v+s +
  CCG032794.1   6 LPPGFRFHPTDEELVAYYLRRKINAHKIEL-EIIPEVDLYKCEPWDLPgKsLLPSKDLEWYFFSPRDRKYPNGSRTNRATKAGYWKATGKDRKVIS-Q 101
                  79****************************.99***************6434555777**************************************.9 PP

          NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                   ++vg+kktLv+y+grap+g +t Wvmheyrl
  CCG032794.1 102 MRAVGMKKTLVYYRGRAPHGARTGWVMHEYRL 133
                  999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.06E-604154IPR003441NAC domain
PROSITE profilePS5100559.4776156IPR003441NAC domain
PfamPF023659.2E-307133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 669 aa     Download sequence    Send to blast
MAPVSLPPGF RFHPTDEELV AYYLRRKINA HKIELEIIPE VDLYKCEPWD LPGKSLLPSK  60
DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVIS QMRAVGMKKT LVYYRGRAPH  120
GARTGWVMHE YRLDERECEI NTGLQDAYAL CCVSKRTANI PKIGEHYDST TNQMPCEHSS  180
SIEQYSENHG RCEEYESTNY TMHRNVDTCS TSYRAIGSPL NIGESRNGKW IQSMDGSFGM  240
SAPQFPNYST VPYPPSKVDI ALECARLQHR FTLPPLEVQD FPQFGFTDIK MMHQPSMPES  300
TSTHQTDILQ EILSVAHASQ ELINQSSFQD TWGGNYATAD HDFTFMAGKD VQHNMYSDMM  360
MNSTRWADKP WVDPSTSSMS VEMSDLDETF KAERMIENLR WVGMSNDELE KSFTEETKIV  420
PIENISNFRS REEHGVLGEI GHPGDCMRFN DSEDFSLGFI NDEPNDDNFI EESNIVDDLA  480
SSPSFEVVEE IKVNHGLFVS TRQATKTFFH QLVPSQTVKI YLNPAVVAAN FSIEKAENTR  540
RYATKPSKTT AKENFSGLAS NVVCMIVILL MHCFYLGENV GNGKLTDDFM GSGSVEEEGF  600
CPSKNIKPMK KPAGKLIIKS DDNEKERDLL VTIRGGGGSK LGLFLKKLGL FLTISFALCT  660
ILANHAMAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-53213311140Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011043876.10.0PREDICTED: NAC domain-containing protein 86-like
RefseqXP_011043877.10.0PREDICTED: NAC domain-containing protein 86-like
TrEMBLA0A3N7EWK80.0A0A3N7EWK8_POPTR; Uncharacterized protein
STRINGPOPTR_0004s07910.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44213460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-152NAC domain containing protein 28