PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG032674.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NAC

Protein Properties

Length: 394aa MW: 45456.6 Da PI: 7.5217

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG032674.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	160.4	7e-50	33	158	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 +pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekew+f+++rd+ky++g+r+nr+t++gyWkatg d+ + +++++ CCG032674.1 33 MPGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPALAAIGEKEWFFYVPRDRKYRNGDRPNRVTTTGYWKATGADRMIRTENSRS 129 79*************************.89***********8778899**************************************** PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 +glkktLvfy+g+apkg +t+W+m+eyrl CCG032674.1 130 IGLKKTLVFYSGKAPKGIRTSWIMNEYRL 158 *************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	55.282	32	179	IPR003441	NAC domain
SuperFamily	SSF101941	9.81E-55	32	178	IPR003441	NAC domain
Pfam	PF02365	9.6E-25	34	158	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence Send to blast
MSHNTNNEQN NNNNDCNSNS NNKDDDHDHD MVMPGFRFHP TEEELVEFYL RRKVEGKRFN 60 VELITFLDLY RYDPWELPAL AAIGEKEWFF YVPRDRKYRN GDRPNRVTTT GYWKATGADR 120 MIRTENSRSI GLKKTLVFYS GKAPKGIRTS WIMNEYRLPH HETERYQKVE ISLCRVYKRA 180 GVEDHPSLPR SLPSRASSSR GTQSDKKHQS HITVERFQPY VGQSSQQIEM EKMSETDASS 240 SSDVTTALGL SKHNSNAYHP TPPISNSLGL PASVGEGMFL NLPKQASSSL IPSFTNLFSV 300 TSSVSSSPID DLHRLLNYQQ ASIDHHYQQQ QQQQFYLLQQ PQHQSSQLSS MTPQTSQQLP 360 LNMLPELLPP TFPDRIWEWN QMPEANRDFN NPFK

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence Send to blast

MSHNTNNEQN NNNNDCNSNS NNKDDDHDHD MVMPGFRFHP TEEELVEFYL RRKVEGKRFN  60
VELITFLDLY RYDPWELPAL AAIGEKEWFF YVPRDRKYRN GDRPNRVTTT GYWKATGADR  120
MIRTENSRSI GLKKTLVFYS GKAPKGIRTS WIMNEYRLPH HETERYQKVE ISLCRVYKRA  180
GVEDHPSLPR SLPSRASSSR GTQSDKKHQS HITVERFQPY VGQSSQQIEM EKMSETDASS  240
SSDVTTALGL SKHNSNAYHP TPPISNSLGL PASVGEGMFL NLPKQASSSL IPSFTNLFSV  300
TSSVSSSPID DLHRLLNYQQ ASIDHHYQQQ QQQQFYLLQQ PQHQSSQLSS MTPQTSQQLP  360
LNMLPELLPP TFPDRIWEWN QMPEANRDFN NPFK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-55	34	179	19	165	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-55	34	179	19	165	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-55	34	179	19	165	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-55	34	179	19	165	NO APICAL MERISTEM PROTEIN
4dul_A	3e-55	34	179	19	165	NAC domain-containing protein 19
4dul_B	3e-55	34	179	19	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269\|PubMed:17653269}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00257	DAP	Transfer from AT2G02450	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269\|PubMed:17653269}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011011884.1	0.0	PREDICTED: NAC domain-containing protein 72-like
Swissprot	Q9ZVP8	1e-120	NAC35_ARATH; NAC domain-containing protein 35
TrEMBL	A0A2K2B1L0	0.0	A0A2K2B1L0_POPTR; Uncharacterized protein
STRING	cassava4.1_009166m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7203	31	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.1	1e-107	NAC domain containing protein 35

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Okajima K Molecular mechanism of phototropin light signaling. J. Plant Res., 2016. 129(2): p. 149-57 [PMID:26815763] Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii. J Phys Chem B, 2018. 122(6): p. 1801-1815 [PMID:29355019]