PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG032600.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 647aa    MW: 73973.5 Da    PI: 9.079
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG032600.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.81e-07461501239
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkq 39 
                      ++W+ eE ell ++ +++++g   +W+ I++++g+gR+  +
      CCG032600.1 461 KPWSREEIELLRKGMQKYPKGtsrRWEVISEYIGTGRSVDE 501
                      69**********************************99765 PP
2Myb_DNA-binding28.73.1e-09590633344
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 
                       W++  +  lv+a k ++++   +W+++a+ ++ g+t++qc+ ++
      CCG032600.1 590 VWSAVQERALVQALKTFPKEisqRWERVAAAVP-GKTANQCRKKL 633
                      6********************************.********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1102.4E-2092197IPR001623DnaJ domain
SuperFamilySSF465653.53E-1994202IPR001623DnaJ domain
SMARTSM002711.8E-1295170IPR001623DnaJ domain
PfamPF002269.5E-1796175IPR001623DnaJ domain
CDDcd062574.24E-1296167IPR001623DnaJ domain
PROSITE profilePS5007618.04596178IPR001623DnaJ domain
PRINTSPR006253.9E-8101119IPR001623DnaJ domain
PRINTSPR006253.9E-8119134IPR001623DnaJ domain
PRINTSPR006253.9E-8150170IPR001623DnaJ domain
PROSITE patternPS006360155174IPR018253DnaJ domain, conserved site
Gene3DG3DSA:1.10.10.601.3E-5454502IPR009057Homeodomain-like
PROSITE profilePS500906.551455498IPR017877Myb-like domain
SMARTSM007173.1E-6459512IPR001005SANT/Myb domain
SuperFamilySSF466891.2E-7461504IPR009057Homeodomain-like
PfamPF002491.9E-6461502IPR001005SANT/Myb domain
CDDcd001672.34E-4462502No hitNo description
PROSITE profilePS500907.085583632IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.608.8E-6587632IPR009057Homeodomain-like
SMARTSM007172.1E-6587639IPR001005SANT/Myb domain
SuperFamilySSF466892.92E-8589644IPR009057Homeodomain-like
PfamPF002491.4E-7590633IPR001005SANT/Myb domain
CDDcd001676.98E-6591632No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MAIQTRLQLI SYSQELIDGQ PVHVSSNCLP IKALKYEPAG HAYHSAALKL LGWEEEDKKS  60
EDQKVSKDKE QSYMPSSESY STKGKKKTGS GDKQQDHYAM LGLGHLRYLA TEEQIRKSYR  120
EVALKYHPDK QAAILLAEET EAAKQAKKYE IESHFKAIQE AYEALIDPVK RRIYDSTDEF  180
DDEIPTDCAP QDFFKVFGPA FMRNGRWSVN QPIPSLGDEN TSLKEVDSFY NFWYSFKSWR  240
EFPHADEFDL EQAESRDHKR WMERQNAKLS EKARKEDYAR IRTLVDSAYK RDPRILRRKE  300
EGKAEKQRRK EAKFLAKRLQ EEEAARAAEE ERRQKEEEEK RAAEAALQQK KLKEKEKKLL  360
RKERSRLRTL SAPVLPQCLL NLGEDDVENL CMSLDIEQLR SLCDRMEGKE VVEQAKVLRD  420
ACGCDHDSSS SKLDEKKISQ QNGSLKSNGR APSSSSGKKE KPWSREEIEL LRKGMQKYPK  480
GTSRRWEVIS EYIGTGRSVD EILKATKTVL LQKPDTAKAF DSFLEKRKPA QSIASPLTTR  540
EEIQGASAML APESSVAKIA EEESSRDTDK QKTDGMVTAN GVSSSADQDV WSAVQERALV  600
QALKTFPKEI SQRWERVAAA VPGKTANQCR KKLALLKENF RNKKSTA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A1e-2119229520123Zuotin
5dje_B1e-2119229520123Zuotin
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2227300.0CU222730.1 Populus EST from leave.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011034639.10.0PREDICTED: dnaJ homolog subfamily C member 2-like
TrEMBLA0A2K2BRW20.0A0A2K2BRW2_POPTR; Uncharacterized protein
STRINGPOPTR_0001s07310.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60833348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.10.0DnaJ domain ;Myb-like DNA-binding domain