PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG032366.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NAC

Protein Properties

Length: 459aa MW: 51565.2 Da PI: 4.331

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG032366.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	69	1.3e-21	17	148	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevlsk. 95 l pG+rF+P deelv ++L +k+++ ++++ ++++++y ++P ++ + ++ + ++++fF+ ++k+++++ +++ a ++W+ kd++v+++ CCG032366.1 17 LLPGYRFNPYDEELVRFFLYPKLTNPCFTTSAPVRDCNLYACQPLQIWnTFHRIHGEDVFFFTDLKRKSPNSNVSRKiAGGPATWHREDKDHQVCVQi 114 579**********************999888**********734445588899******998877774555778*******997 PP NAM 96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128 + +++ lkk + + +++p+ ++W+m ey+l CCG032366.1 115 dkNYSVTALKKGFSYR-NTQPHQPGCSWMMYEYSL 148 7666679999999986.7888889*******97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.58E-22	10	163	IPR003441	NAC domain
PROSITE profile	PS51005	24.944	17	163	IPR003441	NAC domain
Pfam	PF02365	3.8E-13	19	148	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence Send to blast
MAISQSQTLA TLTSIQLLPG YRFNPYDEEL VRFFLYPKLT NPCFTTSAPV RDCNLYACQP 60 LQIWNTFHRI HGEDVFFFTD LKRKSPNSNV SRKIAGGPAT WHREDKDHQV CVQIDKNYSV 120 TALKKGFSYR NTQPHQPGCS WMMYEYSLPS LSQVTVLCQL RRKDDDNTHQ SMQKNKKRKR 180 PDADGVDDAA NTISQKARVD QHDQQQHNMG FYRASETVSE EVVNGVRFKD FESFYRENVQ 240 DFDSCEMAAY SITSTTGHVS PTTVSTLNPE ENFKPFEIFW IDNDGEAEAN EDDNLQQKVV 300 EMLNFSDEAD VVPTIEAAPI QADGVQATQV GSNLIEVVCI DNDGEAAAKG DDDLRPEILE 360 LLNSNGCSDK ADMVPAIEAA PVQVDGVQAT QVGSILIESF TSEVVDHHPD SEVSDDSTLS 420 SDWIESFPPA FAQANPTCGL IQENKIQMIP NPFFMDCFY

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence Send to blast

MAISQSQTLA TLTSIQLLPG YRFNPYDEEL VRFFLYPKLT NPCFTTSAPV RDCNLYACQP  60
LQIWNTFHRI HGEDVFFFTD LKRKSPNSNV SRKIAGGPAT WHREDKDHQV CVQIDKNYSV  120
TALKKGFSYR NTQPHQPGCS WMMYEYSLPS LSQVTVLCQL RRKDDDNTHQ SMQKNKKRKR  180
PDADGVDDAA NTISQKARVD QHDQQQHNMG FYRASETVSE EVVNGVRFKD FESFYRENVQ  240
DFDSCEMAAY SITSTTGHVS PTTVSTLNPE ENFKPFEIFW IDNDGEAEAN EDDNLQQKVV  300
EMLNFSDEAD VVPTIEAAPI QADGVQATQV GSNLIEVVCI DNDGEAAAKG DDDLRPEILE  360
LLNSNGCSDK ADMVPAIEAA PVQVDGVQAT QVGSILIESF TSEVVDHHPD SEVSDDSTLS  420
SDWIESFPPA FAQANPTCGL IQENKIQMIP NPFFMDCFY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	160	179	RRKDDDNTHQSMQKNKKRKR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002317507.3	0.0	NAC domain-containing protein 13
TrEMBL	A0A2K1YJ48	0.0	A0A2K1YJ48_POPTR; Uncharacterized protein
STRING	POPTR_0011s12190.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13633	5	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17260.1	2e-12	NAC domain containing protein 86