PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG032210.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | YABBY | ||||||||
Protein Properties | Length: 206aa MW: 23232.1 Da PI: 6.6199 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 163.3 | 1.8e-50 | 12 | 157 | 19 | 168 |
YABBY 19 ntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvpp.v 115 + i vsvP +sl++vvtv CGhCtsl+svn++k+s l s + s ++e++e+l+ e ++ k +++++ s + ++++d+++ +v + + CCG032210.1 12 DQICYVSVPCSSLSTVVTVICGHCTSLFSVNMKKFSFLPFNLST-SLSNEDEQKEQLRPEVNAQKGLEMQNSFMAISFN----NDEDDRNINQVNRvI 104 567889***************************99977666654.6667777888888877776666555444433333....356666777776658 PP YABBY 116 irPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihf 168 ++PPekrqr Psaynrfi+eei+rik++nP i+h+eafs+aaknWah P +h CCG032210.1 105 NKPPEKRQRGPSAYNRFIREEIRRIKTENPRIAHKEAFSTAAKNWAHSPLVHC 157 9**************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 3.8E-51 | 12 | 157 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.83E-7 | 101 | 151 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.7E-4 | 106 | 151 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MSTLNHLFDL PDQICYVSVP CSSLSTVVTV ICGHCTSLFS VNMKKFSFLP FNLSTSLSNE 60 DEQKEQLRPE VNAQKGLEMQ NSFMAISFNN DEDDRNINQV NRVINKPPEK RQRGPSAYNR 120 FIREEIRRIK TENPRIAHKE AFSTAAKNWA HSPLVHCEYT VGESSGLEEE NGSWSCDAAD 180 QVNVESKGLH GGKVPRHSML AKTPFE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011034119.1 | 1e-151 | PREDICTED: axial regulator YABBY 4-like isoform X1 | ||||
Swissprot | Q9LDT3 | 6e-57 | YAB4_ARATH; Axial regulator YABBY 4 | ||||
TrEMBL | A0A2K1ZJQ3 | 1e-129 | A0A2K1ZJQ3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0008s19330.1 | 1e-127 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6144 | 28 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23420.1 | 1e-55 | YABBY family protein |
Publications ? help Back to Top | |||
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