PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG032140.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bZIP
Protein Properties Length: 278aa    MW: 30021.3 Da    PI: 6.6835
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG032140.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.91.4e-10224271552
                  CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 
                  kr++r   NR +A rs +RK  +i+eLe+k+++L++e ++L  +l  l
  CCG032140.1 224 KRAKRIWANRQSAARSKERKMRYIAELERKMQTLQTEATSLSAQLTLL 271
                  9****************************************9998877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.1E-6220277IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.668222272IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.5E-11224275No hitNo description
Gene3DG3DSA:1.20.5.1701.3E-10224272No hitNo description
PfamPF001702.0E-9224271IPR004827Basic-leucine zipper domain
CDDcd147033.39E-25225272No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MDKDKSPSNH SSGLPPPSGR FSCFSPSGSS YNVKPEQSPS TFPPKAPGSS SDPSHFGHGL  60
DSNRFSHDIS RMSDNPSKNL GHRRAHSEIL TLPDDISFDS DLGVVGGGTD GTTFSDETEE  120
DYLSMYLDMD KFSSSSATSA FQVGESSAPP VPAQPLTPLP ATVDLGAGPS ERPKVRHQHS  180
LSMDGSTTIK PEMLMSGSEE ASHADSKKSI SAAKLAELAL IDPKRAKRIW ANRQSAARSK  240
ERKMRYIAEL ERKMQTLQTE ATSLSAQLTL LQPTFHVF
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor with an activatory role.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011011507.10.0PREDICTED: probable transcription factor PosF21
RefseqXP_011011508.10.0PREDICTED: probable transcription factor PosF21
RefseqXP_011011509.10.0PREDICTED: probable transcription factor PosF21
SwissprotQ040881e-105POF21_ARATH; Probable transcription factor PosF21
TrEMBLA0A2K1ZTP51e-173A0A2K1ZTP5_POPTR; Uncharacterized protein
STRINGPOPTR_0007s01760.11e-173(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55173249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06070.12e-95bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]