PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

CCG032140.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bZIP

Protein Properties

Length: 278aa MW: 30021.3 Da PI: 6.6835

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG032140.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.9	1.4e-10	224	271	5	52
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 kr++r NR +A rs +RK +i+eLe+k+++L++e ++L +l l CCG032140.1 224 KRAKRIWANRQSAARSKERKMRYIAELERKMQTLQTEATSLSAQLTLL 271 9****************************************9998877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.1E-6	220	277	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.668	222	272	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.5E-11	224	275	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.3E-10	224	272	No hit	No description
Pfam	PF00170	2.0E-9	224	271	IPR004827	Basic-leucine zipper domain
CDD	cd14703	3.39E-25	225	272	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MDKDKSPSNH SSGLPPPSGR FSCFSPSGSS YNVKPEQSPS TFPPKAPGSS SDPSHFGHGL 60 DSNRFSHDIS RMSDNPSKNL GHRRAHSEIL TLPDDISFDS DLGVVGGGTD GTTFSDETEE 120 DYLSMYLDMD KFSSSSATSA FQVGESSAPP VPAQPLTPLP ATVDLGAGPS ERPKVRHQHS 180 LSMDGSTTIK PEMLMSGSEE ASHADSKKSI SAAKLAELAL IDPKRAKRIW ANRQSAARSK 240 ERKMRYIAEL ERKMQTLQTE ATSLSAQLTL LQPTFHVF

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor with an activatory role.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011011507.1	0.0	PREDICTED: probable transcription factor PosF21
Refseq	XP_011011508.1	0.0	PREDICTED: probable transcription factor PosF21
Refseq	XP_011011509.1	0.0	PREDICTED: probable transcription factor PosF21
Swissprot	Q04088	1e-105	POF21_ARATH; Probable transcription factor PosF21
TrEMBL	A0A2K1ZTP5	1e-173	A0A2K1ZTP5_POPTR; Uncharacterized protein
STRING	POPTR_0007s01760.1	1e-173	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5517	32	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	2e-95	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]