PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG032123.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 239aa    MW: 26729.8 Da    PI: 6.512
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG032123.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.37.4e-051892251354
                  HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                  R+++++   +Lr ++P  +       ++ +++L +Av+Y+ksL
  CCG032123.1 189 RQKMKKMVKTLRGIVPGgD------QMNTVTVLDEAVRYLKSL 225
                  799*************955......8***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.931176225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-6183231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-8186232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.92E-6186230No hitNo description
SuperFamilySSF474591.22E-8187233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MHSDRYFRSK EAMPPLTNQV DNNNMHFPVA TTFSAVQPLA AKHLMPVHGI EFQSSEIRPR  60
KFIIFDQADH RSQVMYNPAV AHNHGGPGFD IHPTYIQENF ERTDTYNVER EISSSLKEDS  120
DDIDALMSLE EEDPEECDGE EVSTARTCRN YGSSSPDSCS SYGAKPMKNG SSVQKCSSSG  180
SSSNSERKRQ KMKKMVKTLR GIVPGGDQMN TVTVLDEAVR YLKSLKVEVQ KLGVGNFKN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011011539.10.0PREDICTED: transcription factor bHLH144-like
RefseqXP_011011540.10.0PREDICTED: transcription factor bHLH144-like
RefseqXP_011011542.10.0PREDICTED: transcription factor bHLH144-like
RefseqXP_011011543.10.0PREDICTED: transcription factor bHLH144-like
RefseqXP_011011544.10.0PREDICTED: transcription factor bHLH144-like
RefseqXP_011011545.10.0PREDICTED: transcription factor bHLH144-like
RefseqXP_011011546.10.0PREDICTED: transcription factor bHLH144-like
TrEMBLB9I1021e-146B9I102_POPTR; Uncharacterized protein
STRINGPOPTR_0011s02710.11e-147(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114111113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29950.22e-38bHLH family protein