PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG032111.3
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 669aa    MW: 73804.3 Da    PI: 7.9839
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG032111.3genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.11.5e-08172191525
                  --SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                  +C+ffa+ G+C +G++C+F H
  CCG032111.3 172 ICDFFAK-GWCIRGSSCRFLH 191
                  8******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF161318.5E-7141198IPR032297Torus domain
SMARTSM003560.0043167193IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.145167194IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6167192IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.8E-4172192IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 669 aa     Download sequence    Send to blast
MGSHSTLEMS EMREDSVSNF KCSGPLDGPL TLQKEKSCVN YLDSWSPKLS KHLVIARKNG  60
TLEHAINKTD AFGHSKTHLS NSSEAVAVET TEPFVITGIE VDVVLSKRNC LGQEANVVLD  120
SKEELKPVDV KSEDSKEQTE SRLSRLVASV TRARSLSPST ELRDGNKRAA VICDFFAKGW  180
CIRGSSCRFL HKTNKADNTG QQLGLDEVAI REDQFDEGAR NILETPKFPH FPDPVAASTG  240
KEATFSSHFS SERLPPLEHK ENERLHQLDD EHKLSLRQRV GIPLNAKQFS SSKDDPSFSS  300
SFKDVGMENF RQHWPATDCG SYTSLINRGS SFSFSSSFDT SLLGSQKLLD SDRASRSSSL  360
PRSASAFSGS EPESLSLASV PGDQLRHAEH KTKISSNDWE PSIPFRPSFF ITPEMISSAR  420
SKYDPLRDSF VLPNVGDKSF KFSFFSLGAS ISNALQQPIY GDSLSNRNFG TECKGDKSTI  480
SSHDKPHRSL SDKNCSTPGK DSFTTATVTG GAGTADGENG SALKEESASG IGYEKVNRVT  540
NKNDCDARPQ IDRSRHKKDL KADSVRQNND MEVDQKIGGD LQKESKVLRH FRAALIDFVK  600
DLLKPTWREG HLSKDAHNTI VKKTVEKVLS TLQPHQIPAN VESIKQYLSS SQPKMAKLVE  660
GYISKYGKS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011043418.10.0PREDICTED: protein FRIGIDA-ESSENTIAL 1 isoform X1
TrEMBLA0A2K1YG220.0A0A2K1YG22_POPTR; Uncharacterized protein
STRINGPOPTR_0011s05550.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108052733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.12e-38C3H family protein