PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG031773.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 293aa    MW: 34205.8 Da    PI: 8.7165
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG031773.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.61.7e-1953100148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd llv++v+++G g+W+++ar  g++R +k+c++rw +yl
      CCG031773.1  53 KGPWTAEEDRLLVEYVRLHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 100
                      79********************************************97 PP
2Myb_DNA-binding538.2e-17106150147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg  T+ E+ ++v++++++G++ W+tIar ++ gRt++++k++w+++
      CCG031773.1 106 RGQITPHEERIIVELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 150
                      7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.68848104IPR017930Myb domain
SuperFamilySSF466895.31E-3052147IPR009057Homeodomain-like
SMARTSM007176.5E-1752102IPR001005SANT/Myb domain
PfamPF002499.7E-1853100IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-2454107IPR009057Homeodomain-like
CDDcd001672.14E-1255100No hitNo description
PROSITE profilePS5129419.297105155IPR017930Myb domain
SMARTSM007176.8E-15105153IPR001005SANT/Myb domain
PfamPF002497.5E-14106150IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.7E-24108153IPR009057Homeodomain-like
CDDcd001671.40E-10110151No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MQQTLNPDAQ NLEDSLCQHF NKPKPFFPPL HISLGVMAGQ LRWGGLIEEV WRKGPWTAEE  60
DRLLVEYVRL HGEGRWNSVA RLAGLKRNGK SCRLRWVNYL RPDLKRGQIT PHEERIIVEL  120
HARWGNRWST IARSLPGRTD NEIKNYWRTH FKKAAKLSPD SSDKARTHLL KRQQFQQQQQ  180
QQLQQQQQQI QYQQLLQLNH LDMKKIMSSL DENENNAPYT PQMRQETAPH ALYPNTTEEH  240
VLLYNMFNAS VPEALNEDII WDGLWNLDDV HGNFGVACAT SRACMHNLVS PFC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-274015514128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC2976920.0KC297692.1 Populus tomentosa MYB gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011041468.10.0PREDICTED: transcription factor MYB24-like
TrEMBLA0A2K1YPW11e-154A0A2K1YPW1_POPTR; Uncharacterized protein
STRINGPOPTR_0010s07450.11e-154(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118234108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13480.16e-90myb domain protein 79