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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG031601.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 437aa MW: 49431.7 Da PI: 8.0496 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.4 | 9.9e-20 | 255 | 304 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp+ + +r++lg+f+tae+Aa a+++a++k++g CCG031601.1 255 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEDAAVAYDKAALKFKG 304 7********.**********94....45************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 8.2E-33 | 254 | 313 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.3E-39 | 255 | 318 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.856 | 255 | 312 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.6E-12 | 255 | 304 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.42E-34 | 255 | 313 | No hit | No description |
SuperFamily | SSF54171 | 2.42E-22 | 255 | 313 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.4E-11 | 256 | 267 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-11 | 278 | 294 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0071497 | Biological Process | cellular response to freezing | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 437 aa Download sequence Send to blast |
MFRVVEKRGF DQAIDLSLEI LSNVKYVLET RLIGKSWKKS FRMFVYGLED PVKGLGIWED 60 FIGYKPFFLE NPLFSEKLPS PLLLVYINER ATFVTASALD MQSSNFKNCF DSVDPGSLHC 120 GRARFDFAHV LIRSYKSSEA TALISCPRII IPKPKNLVYI NYFLKVDRRH GKRPLPLEAS 180 EEKEKEHDEF PSYASTWSET DMSAMVSALT QVMGTTDNNP TSVQSTPYAL EQSVVKDEPD 240 QSQPVQDQEN TRRRHYRGVR QRPWGKWAAE IRDPKKAARV WLGTFDTAED AAVAYDKAAL 300 KFKGTKAKLN FPERVQGKTE FGYFMGSGAS SNFLTEQSPR PVAPPPPPPP PPPPPPSSFA 360 PDTYPDLLQY AQILSSNDAN FPYYTSNLFN QQPFAPHFSS SFLSQQQQDL LRFSSRFDSS 420 SSSDQQKHGK DSSNPSE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-26 | 254 | 315 | 4 | 66 | ATERF1 |
3gcc_A | 3e-26 | 254 | 315 | 4 | 66 | ATERF1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011020891.1 | 1e-170 | PREDICTED: ethylene-responsive transcription factor ERF113-like | ||||
TrEMBL | B9GZ21 | 1e-119 | B9GZ21_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s12990.1 | 1e-111 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF985 | 34 | 115 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13330.1 | 4e-42 | related to AP2 6l |