PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG031592.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ARF
Protein Properties Length: 638aa    MW: 72644.1 Da    PI: 8.4698
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG031592.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.92.9e-21299599
                 -..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3  5 ltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                 lt sd++++g +++ k++a+e+      +++++  ++l+ +d++g +W++++i+r++++r++l++GW+ Fv+a++L +gD ++F   +++++el+v+v+r
  CCG031592.1  2 LTASDTSTHGGFSVLKRHADEClppldmSLQPPV-QELVAKDLHGHEWRFRHIFRGQPRRHLLQSGWSLFVSAKKLVAGDAFIFL--RSETEELRVGVRR 98
                 689************************9666655.49************************************************..4488889****98 PP

                 S CS
           B3 99 k 99
                 +
  CCG031592.1 99 A 99
                 5 PP
2Auxin_resp119.92e-39124206183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  a+ha+st+s+F+v+Y+Pr+s++eF+++v+k+++++k+++++GmRfkm+fe +d++e+r+sGtv+gv+++dp +Wp+S+Wr+Lk
  CCG031592.1 124 AWHAVSTGSMFTVYYKPRTSPAEFIIPVDKYMESVKINYTIGMRFKMRFEADDAPEQRFSGTVIGVEEADPKKWPRSNWRCLK 206
                  89*******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010196.7E-151100IPR003340B3 DNA binding domain
PROSITE profilePS5086311.2931100IPR003340B3 DNA binding domain
SuperFamilySSF1019363.04E-352127IPR015300DNA-binding pseudobarrel domain
PfamPF023624.4E-19299IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.3E-352113IPR015300DNA-binding pseudobarrel domain
CDDcd100173.21E-17298No hitNo description
PfamPF065074.2E-36124206IPR010525Auxin response factor
PfamPF023091.5E-9490587IPR033389AUX/IAA domain
PROSITE profilePS5174524496589IPR000270PB1 domain
SuperFamilySSF542773.24E-11496573No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 638 aa     Download sequence    Send to blast
MLTASDTSTH GGFSVLKRHA DECLPPLDMS LQPPVQELVA KDLHGHEWRF RHIFRGQPRR  60
HLLQSGWSLF VSAKKLVAGD AFIFLRSETE ELRVGVRRAL RQPSKIPSSV ISSHSMHIGI  120
LATAWHAVST GSMFTVYYKP RTSPAEFIIP VDKYMESVKI NYTIGMRFKM RFEADDAPEQ  180
RFSGTVIGVE EADPKKWPRS NWRCLKVHWD ETSPVHRPDR VSPWKVEPAL APSMGPVSGC  240
RLKRHRPNTV TSSADSSSLT KKDNGPSRHM QHQEILTLRN TPTGKNYSDN NHNPPWVLSQ  300
GTGTLLKSYE SSRPFFGLYS DDVDQPSKLT SDEKSMFNWH SAPMMYTGHP FNMLASSMEA  360
QVAKDKDTQQ QHGSRFLPFP YADSSPRPSR SKPQHLPFQQ CNERTAKDDN YKLFGVSLFG  420
NSKALEPATI HRHSVDKPQH QINVASDHLQ LLGSERYLEQ LKHPKHARCE EQENIFQASS  480
LYLKDVQGKP ERGSARRCVK VHKQGTAVGR SLDLAKFNGY NELTAELDRI FEFNGELVAP  540
NKDWLIVFTD DEDDMMLVGD DPWQEFCSMV RRIFIYTREE INRMEPRSLN LEAEGNSRST  600
DQMVDLENQI SKHLPAVSPS ECQGLCYMTG SKVMRPER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1152228128354Auxin response factor 1
4ldw_A1e-1152228128354Auxin response factor 1
4ldw_B1e-1152228128354Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Functions independently of ethylene and cytokinin response pathways. May act as a repressor of cell division and organ growth. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:15960614, ECO:0000269|PubMed:16176952, ECO:0000269|PubMed:16339187}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2084820.0AC208482.1 Populus trichocarpa clone JGIACSB13-H05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011020868.10.0PREDICTED: auxin response factor 2-like isoform X2
SwissprotQ94JM30.0ARFB_ARATH; Auxin response factor 2
TrEMBLA0A2K2B8380.0A0A2K2B838_POPTR; Auxin response factor
STRINGPOPTR_0003s16210.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32813366
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.40.0auxin response factor 2
Publications ? help Back to Top
  1. Chao WS,Doğramaci M,Foley ME,Horvath DP,Anderson JV
    Selection and validation of endogenous reference genes for qRT-PCR analysis in leafy spurge (Euphorbia esula).
    PLoS ONE, 2012. 7(8): p. e42839
    [PMID:22916167]
  2. Ozerova LV,Krasnikova MS,Troitsky AV,Solovyev AG,Morozov SY
    TAS3 Genes for small ta-siARF RNAs in plants belonging to subtribe Senecioninae: occurrence of prematurely terminated RNA precursors.
    Mol. Gen. Mikrobiol. Virusol., 2013.
    [PMID:24003511]
  3. Li C, et al.
    Ectopic expression of a maize hybrid down-regulated gene ZmARF25 decreases organ size by affecting cellular proliferation in Arabidopsis.
    PLoS ONE, 2014. 9(4): p. e94830
    [PMID:24756087]
  4. Lyons R, et al.
    Fusarium oxysporum triggers tissue-specific transcriptional reprogramming in Arabidopsis thaliana.
    PLoS ONE, 2015. 10(4): p. e0121902
    [PMID:25849296]
  5. Roodbarkelari F,Du F,Truernit E,Laux T
    ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response.
    BMC Biol., 2015. 13: p. 74
    [PMID:26358077]
  6. Meng LS,Wang ZB,Yao SQ,Liu A
    The ARF2-ANT-COR15A gene cascade regulates ABA-signaling-mediated resistance of large seeds to drought in Arabidopsis.
    J. Cell. Sci., 2015. 128(21): p. 3922-32
    [PMID:26395398]
  7. Zhao S,Zhang ML,Ma TL,Wang Y
    Phosphorylation of ARF2 Relieves Its Repression of Transcription of the K+ Transporter Gene HAK5 in Response to Low Potassium Stress.
    Plant Cell, 2016. 28(12): p. 3005-3019
    [PMID:27895227]
  8. Promchuea S,Zhu Y,Chen Z,Zhang J,Gong Z
    ARF2 coordinates with PLETHORAs and PINs to orchestrate ABA-mediated root meristem activity in Arabidopsis .
    J Integr Plant Biol, 2017. 59(1): p. 30-43
    [PMID:28074634]
  9. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  10. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  11. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]
  12. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]
  13. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]
  14. Sarkar Das S, et al.
    Expression dynamics of miRNAs and their targets in seed germination conditions reveals miRNA-ta-siRNA crosstalk as regulator of seed germination.
    Sci Rep, 2018. 8(1): p. 1233
    [PMID:29352229]