PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG031585.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 292aa    MW: 32922.4 Da    PI: 8.4668
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG031585.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.13.8e-09171217454
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++ L
  CCG031585.1 171 SHSLAERVRREKISTRMKLLQSLVPGC----DKITGKALVLDEIIKYVQFL 217
                  8*************************9....899**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.42E-15165232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.86E-8165222No hitNo description
PROSITE profilePS5088815.059167217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-15168232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-6171217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-8173223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MAVFSYQQQH PASVVDEFQL DSNTNIASGA LFSPNLPYEC LQEGPLHAER ILETIHADDN  60
SIAKVPFMST IDHSSTIARH NSSSSMVVDL QYCEENQVSQ AMTPTLWQLR KHSSPAIKVK  120
RESKRQKLNP DSSVSRNAKR VRPAKKQKKV PVEPPTGYVH VRARRGEATD SHSLAERVRR  180
EKISTRMKLL QSLVPGCDKI TGKALVLDEI IKYVQFLKDR VQSFEAQLDL LNGAFIDEFD  240
VKFNRETQAW QELFISELQL PSILESGSSL LPSLVEKTDA TASLLQPHLK NY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002303756.20.0transcription factor bHLH137
TrEMBLA0A3N7EW880.0A0A3N7EW88_POPTR; Uncharacterized protein
STRINGPOPTR_0003s16300.11e-153(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16101510
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.26e-39bHLH family protein