PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG031371.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 558aa    MW: 60972.6 Da    PI: 4.7055
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG031371.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.82.1e-173986148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT  Ed +l+++vk++G g+W+++ ++ g+ R++k+c++rw ++l
      CCG031371.1 39 KGPWTSAEDAILIEYVKKHGEGNWNSVQKHSGLFRCGKSCRLRWANHL 86
                     79******************************************9986 PP
2Myb_DNA-binding53.94.1e-1792135146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++T+eE++l++++++++G++ W++ a++++ gRt++++k++w++
      CCG031371.1  92 KGAFTQEEEQLIIELHAKMGNK-WARMAAHLP-GRTDNEIKNYWNT 135
                      799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.8723486IPR017930Myb domain
SuperFamilySSF466891.91E-3038133IPR009057Homeodomain-like
SMARTSM007171.5E-153888IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-244093IPR009057Homeodomain-like
CDDcd001674.17E-124186No hitNo description
PfamPF139213.1E-1642102No hitNo description
PROSITE profilePS5129426.87287141IPR017930Myb domain
SMARTSM007172.3E-1791139IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-2694140IPR009057Homeodomain-like
CDDcd001671.12E-1294135No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0045926Biological Processnegative regulation of growth
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MSRTTSESED GMISKDQTES PLGEEGNYGG GTNGVVLKKG PWTSAEDAIL IEYVKKHGEG  60
NWNSVQKHSG LFRCGKSCRL RWANHLRPNL KKGAFTQEEE QLIIELHAKM GNKWARMAAH  120
LPGRTDNEIK NYWNTRIKRR QRAGLPLYPP EVSLQTLQGS QQCLDINGMG SGNKGQHDIL  180
QTHNYGIPVV VFDNLKTNQS ILPYVPELPD ISASSILMKG LCSSQYGSFM SPTMHRQKRL  240
REATTLLTSF SGGMKNDFHL FDQFQDGDKA AQYFGLSFPF NPDSATENPE IFGENQGSHT  300
LANGDFSASK PTSEAVKLEL PSLQYAEIDL GGWGASCSPS PLIESVDTFI QSPPTGTVES  360
NFPSPRNSGL LDALLYEART LSSAKNQSSD KSSNSSTITP GDNADCSALN ISETEWEDYG  420
DPISPLGHPV TSLFSECTPI SASGSSLDES PPTETLTGCK MKSEPVDHTW TADREKESYT  480
QLDITRPDAL LDSDWLEHDS GYGKNQDIMT EAVATLLGDD LSSEYKQMAA GASTDHGWGL  540
GSCSWNNMPA VCQMSELP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-32371405107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00490DAPTransfer from AT5G06100Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011020506.10.0PREDICTED: transcription factor GAMYB
RefseqXP_011020507.10.0PREDICTED: transcription factor GAMYB
RefseqXP_011020508.10.0PREDICTED: transcription factor GAMYB
TrEMBLA0A3S9LX190.0A0A3S9LX19_POPTO; Transcription factor GAMYB
TrEMBLA0A3S9LX420.0A0A3S9LX42_POPTO; Transcription factor GAMYB
STRINGPOPTR_0003s18900.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20473485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.31e-141myb domain protein 33