PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG031369.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 647aa    MW: 73608.7 Da    PI: 8.7073
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG031369.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.95.6e-09590634345
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                       W++  +  lv+a k ++++   +W+++a+ ++ g+t +qck ++ 
      CCG031369.1 590 VWSAVQERALVQALKTFPKEtsqRWERVAAAVP-GKTINQCKKKFA 634
                      6********************************.********9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465652.36E-1993174IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1108.6E-2193196IPR001623DnaJ domain
SMARTSM002719.3E-1495170IPR001623DnaJ domain
PROSITE profilePS5007618.30396178IPR001623DnaJ domain
PfamPF002262.3E-1796175IPR001623DnaJ domain
CDDcd062571.46E-1296167IPR001623DnaJ domain
PRINTSPR006253.9E-8101119IPR001623DnaJ domain
PRINTSPR006253.9E-8119134IPR001623DnaJ domain
PRINTSPR006253.9E-8150170IPR001623DnaJ domain
PROSITE patternPS006360155174IPR018253DnaJ domain, conserved site
Gene3DG3DSA:1.10.10.605.2E-4455502IPR009057Homeodomain-like
SuperFamilySSF466898.22E-7457503IPR009057Homeodomain-like
PROSITE profilePS512936.076458513IPR017884SANT domain
SMARTSM007171.3E-5459512IPR001005SANT/Myb domain
CDDcd001678.18E-4462502No hitNo description
Gene3DG3DSA:1.10.10.601.3E-5582633IPR009057Homeodomain-like
PROSITE profilePS512938.174586641IPR017884SANT domain
SMARTSM007171.6E-8587639IPR001005SANT/Myb domain
SuperFamilySSF466895.83E-9589645IPR009057Homeodomain-like
PfamPF002492.2E-7590633IPR001005SANT/Myb domain
CDDcd001671.26E-5591637No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MAIQTSLRLI SYSQELVDGQ PLHVSSNGLP IKALKFEPAG HAFHTAALKL LGWEEEGTKT  60
EDQKVSNDKQ QSYMPSSESY STKGKKKSGS GDMQQDHYAL LGLGHLRYLA TEEQIRKSYR  120
EVALKYHPDK QAAILLAEET EAAKQAKKDE IESHFKAIQE AYEALIDPVK RRIYDSTDEF  180
DDEIPTDCAP QDFFKVFGPA FTRNGRWSVN QTVPSLGDEK TSLKEVDSFY NFWYSFKSWR  240
EFPHADEFDL EEAESRDHKR WMERQNAKLS EKARKEDYAR IRTLVDSAYK RDPRILRRKE  300
EEKAEKQRKK EAKFLAKRLQ EEEAARAAEE EKRQKEEEEK RVAEAALQQK KLKEKEKKLL  360
RKERSRLRTL SGSVLSQCLL NLSEADVENL CMSLDIEQLR SVCDRIEGKE VLEQAKVLRD  420
ACGCDNDSGS SKQEEKKISQ QNGSLNSNGS SPLSSSGKKE KPWGREEIEL LRKGTQKYPK  480
GTSRRWEVIS DYIGTGRSVE EILKATKTVL LQKPDAAKAF DSFLEKRKPA QSIASPLSTR  540
EEIEGASTVQ ARESSAAKVA QEESSRDTDK QKTDDLVTAN GLSSSADQDV WSAVQERALV  600
QALKTFPKET SQRWERVAAA VPGKTINQCK KKFALLKESF RNKKNTA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A3e-2019229520123Zuotin
5dje_B3e-2019229520123Zuotin
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2227300.0CU222730.1 Populus EST from leave.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011020504.10.0PREDICTED: dnaJ homolog subfamily C member 2-like
RefseqXP_011020505.10.0PREDICTED: dnaJ homolog subfamily C member 2-like
TrEMBLB9GXK50.0B9GXK5_POPTR; Uncharacterized protein
STRINGPOPTR_0003s18930.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60833348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.10.0DnaJ domain ;Myb-like DNA-binding domain