PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG031258.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 322aa    MW: 35586.9 Da    PI: 6.6655
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG031258.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.61.2e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +lv +++++G+g+W++++   g++R+ k+c++rw +yl
      CCG031258.1 14 KGPWTPEEDIILVSYIQEHGPGNWRAVPTSTGLHRCSKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding47.34.9e-1567112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T  E++ ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
      CCG031258.1  67 RGNFTDHEEKMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNFWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.8E-24564IPR009057Homeodomain-like
PROSITE profilePS5129425.315965IPR017930Myb domain
SuperFamilySSF466891.09E-3011108IPR009057Homeodomain-like
SMARTSM007177.7E-151363IPR001005SANT/Myb domain
PfamPF002493.4E-161461IPR001005SANT/Myb domain
CDDcd001671.82E-111661No hitNo description
Gene3DG3DSA:1.10.10.603.1E-2465116IPR009057Homeodomain-like
SMARTSM007178.5E-1566114IPR001005SANT/Myb domain
PROSITE profilePS5129418.67466116IPR017930Myb domain
PfamPF002491.7E-1367112IPR001005SANT/Myb domain
CDDcd001671.06E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0080167Biological Processresponse to karrikin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MGRPPCCDKI GVKKGPWTPE EDIILVSYIQ EHGPGNWRAV PTSTGLHRCS KSCRLRWTNY  60
LRPGIKRGNF TDHEEKMIIH LQALLGNRWA AIASYLPQRT DNDIKNFWNT HLKKKLRKLQ  120
AGQEGQSRDG ISSTGSQQIS RGQWERRLQT DINMARQALC EALSPGKPGS LVTGLKPSCG  180
YEKPATEPIY ASSTENIARL LEGWMISGPK QSLKNSTTQN SFIDMAGADS LSSEGTPDKA  240
DKNGTGLSQA FESLLGFDSF DSSNSDFSQS MSPDTGLFQD ESKPNSSAQV PLSLIERWLL  300
DEGAMQGKDC INEVTTDEDN LF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C8e-25141164105C-Myb DNA-Binding Domain
1msf_C8e-25141164105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00395DAPTransfer from AT3G47600Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011008114.10.0PREDICTED: myb-related protein 306-like
SwissprotP813921e-117MYB06_ANTMA; Myb-related protein 306
TrEMBLB9IJX20.0B9IJX2_POPTR; Uncharacterized protein
STRINGPOPTR_0017s11880.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101634115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.11e-108myb domain protein 94
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]