PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG031247.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

M-type_MADS

Protein Properties

Length: 396aa MW: 45231 Da PI: 7.5165

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG031247.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	54.4	1.6e-17	4	46	3	45
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 i + r tf kR++g+lKKA+E S+LC+++++viif++++k CCG031247.1 4 IRKEKSRMLTFRKRKAGLLKKASEFSILCGVNACVIIFGPKQK 46 56677899********************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	1.44E-16	1	87	IPR002100	Transcription factor, MADS-box
CDD	cd00266	5.07E-20	1	63	No hit	No description
SMART	SM00432	4.8E-11	1	59	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	15.39	1	46	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.9E-18	4	46	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence Send to blast
MELIRKEKSR MLTFRKRKAG LLKKASEFSI LCGVNACVII FGPKQKDDHQ PVSPETWPPN 60 SEEVRCIINR YKGSDQPRRC YQVSDYFADK KKQIDSELAR LHKQIIKTKY PAWDDRLNNL 120 YANQLGVLID HLNAKIDLAD KKLGSFNTNQ YVMVEPGVQV ASLSPSVSHD MESYMKSRDD 180 NFLQLIHNSN PFDAQPPMVF YPEQSSHVTN LLERKYSNSY STDLQVYCEP RPLDDQLPVG 240 FQSKQTSHGN AIFWESNNGN CYSTDLQLYL EPNPLNVQPP MHFQPKQNAH RTSSYLHGME 300 DAIIKMACDQ NTSDQFGCKL SSSSNLPCVN RTAWMWDNVW FNNADSSVSY IAPTKQPIMP 360 SIQFPMSSSP HQMQSSEASD FTSNLIEFRG KGQGYN

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence Send to blast

MELIRKEKSR MLTFRKRKAG LLKKASEFSI LCGVNACVII FGPKQKDDHQ PVSPETWPPN  60
SEEVRCIINR YKGSDQPRRC YQVSDYFADK KKQIDSELAR LHKQIIKTKY PAWDDRLNNL  120
YANQLGVLID HLNAKIDLAD KKLGSFNTNQ YVMVEPGVQV ASLSPSVSHD MESYMKSRDD  180
NFLQLIHNSN PFDAQPPMVF YPEQSSHVTN LLERKYSNSY STDLQVYCEP RPLDDQLPVG  240
FQSKQTSHGN AIFWESNNGN CYSTDLQLYL EPNPLNVQPP MHFQPKQNAH RTSSYLHGME  300
DAIIKMACDQ NTSDQFGCKL SSSSNLPCVN RTAWMWDNVW FNNADSSVSY IAPTKQPIMP  360
SIQFPMSSSP HQMQSSEASD FTSNLIEFRG KGQGYN

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC297706	0.0	KC297706.1 Populus tomentosa AGL24 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011043016.1	0.0	PREDICTED: agamous-like MADS-box protein AGL80
TrEMBL	B9GRC0	0.0	B9GRC0_POPTR; Uncharacterized protein
STRING	POPTR_0002s25700.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF534	31	111

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G55690.1	3e-26	M-type_MADS family protein