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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG031214.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ARF | ||||||||
Protein Properties | Length: 971aa MW: 107475 Da PI: 7.2109 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.6 | 2.3e-23 | 156 | 257 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+lt sd++++g +++ +++a+e+ + + + +++l+ +d++g +W++++i+r++++r++l++GW+ Fv++++L +gD ++F + +++el CCG031214.1 156 FCKTLTASDTSTHGGFSVLRRHADEClppldmSRQ-PPTQELVAKDLHGSEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGENGEL 250 99*****************************7333.34459************************************************..449999* PP EEEEE-S CS B3 93 vvkvfrk 99 +v+v+r+ CCG031214.1 251 RVGVRRA 257 ****996 PP | |||||||
2 | Auxin_resp | 121.1 | 8.4e-40 | 282 | 364 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+st+++F+v+Y+Pr+s++eF+v+++++++++k+++s+GmRfkm+fe+e+++e+r++Gt+vg++d+dp+rW++SkWr+Lk CCG031214.1 282 AWHAVSTGTMFTVYYKPRTSPAEFIVPFDQYMESVKSNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPSRWKDSKWRCLK 364 89*******************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.01E-40 | 152 | 285 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.7E-41 | 153 | 271 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.21E-21 | 154 | 256 | No hit | No description |
Pfam | PF02362 | 2.8E-21 | 156 | 257 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.4E-23 | 156 | 258 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.942 | 156 | 258 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 5.9E-37 | 282 | 364 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 2.5E-11 | 726 | 805 | No hit | No description |
PROSITE profile | PS51745 | 24.883 | 728 | 812 | IPR000270 | PB1 domain |
Pfam | PF02309 | 1.4E-6 | 770 | 812 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008285 | Biological Process | negative regulation of cell proliferation | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0010047 | Biological Process | fruit dehiscence | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0010227 | Biological Process | floral organ abscission | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 971 aa Download sequence Send to blast |
MASSEISAKA NSGNIKGGGE SFSSGYSEAM GGQKGHSTHP SSARDAETAL YNELWHACAG 60 PLVTVPREGD HVFYFPQGHL EQVEASTNQV ADQQMPVYDL PPKILCRVVN VQLKAEPDTD 120 EVFAQVTLLP LHNQDENASE KEPPPPPPPR FHVHSFCKTL TASDTSTHGG FSVLRRHADE 180 CLPPLDMSRQ PPTQELVAKD LHGSEWRFRH IFRGQPRRHL LQSGWSVFVS SKRLVAGDAF 240 IFLRGENGEL RVGVRRAMRQ QSNVPSSVIS SHSMHLGVLA TAWHAVSTGT MFTVYYKPRT 300 SPAEFIVPFD QYMESVKSNY SIGMRFKMRF EGEEAPEQRF TGTIVGIEDA DPSRWKDSKW 360 RCLKVRWDET STIPRPDRVS PWKIEPALAP PALNPLPMPR PKRPRANMVP SSPDSSVLTR 420 EGSSKVTADP SSASGFSRVL RGQEFSTLRG NFAEGNESDA AEKSVMWPPS ADNEKIDVLS 480 SSRRFGPEWW ISSARQEPTY TDLLSGFGAN ADSSHGFGAP FVDQTAGGAN PMKKHLSDQG 540 QFNLLASPWS IMSPGLSLKL SESNSRVPIQ GSSDVTYQSR ENIRYSAFSE YPMLHGQRVE 600 QSHGNCMMPP PPSHFDNHAH TRELIPKLKP VQEHDTGKSL DGNCKLFGIP LKISKPATPE 660 QAGSTNMVYE PMGHTQPASH QLTSESDQKS EHSRSSKLAD ENENEKPIQV GHMRMRDSHG 720 KAQNSSARSC TKVHKQGIAL GRSVDLMRFN NYDELIAELD RLFEFNGELL APQKNWLIVY 780 TDDEDDMMLV GDDPWQEFVG MVRKIVIYTR EEVQRIKPGT LNSRVNENPS GVEGEEAKEA 840 KHLPLPSASS PLNCFGFRQQ ENAMAISVGK NEMGASLLLS KMSSLLGFQS LACGLRATAP 900 VGEGFTLMGE QGGAHMLKIR QKRNGVSFVA ANRRYGSFIL SDPRHLCLTF SIGLDQRNWT 960 VGSLSSLLIL H |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-177 | 49 | 386 | 18 | 354 | Auxin response factor 1 |
4ldw_A | 1e-177 | 49 | 386 | 18 | 354 | Auxin response factor 1 |
4ldw_B | 1e-177 | 49 | 386 | 18 | 354 | Auxin response factor 1 |
4ldx_A | 1e-177 | 49 | 386 | 18 | 354 | Auxin response factor 1 |
4ldx_B | 1e-177 | 49 | 386 | 18 | 354 | Auxin response factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Functions independently of ethylene and cytokinin response pathways. May act as a repressor of cell division and organ growth. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:15960614, ECO:0000269|PubMed:16176952, ECO:0000269|PubMed:16339187}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00574 | DAP | Transfer from AT5G62000 | Download |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011042961.1 | 0.0 | PREDICTED: auxin response factor 2-like | ||||
Swissprot | Q94JM3 | 0.0 | ARFB_ARATH; Auxin response factor 2 | ||||
TrEMBL | A0A2K1YBW0 | 0.0 | A0A2K1YBW0_POPTR; Auxin response factor | ||||
STRING | POPTR_0012s10790.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3281 | 33 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.3 | 0.0 | auxin response factor 2 |