PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG031204.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 306aa    MW: 34634.4 Da    PI: 8.7472
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG031204.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.18.6e-10182229455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++i +++ +L++l+P +    +k   Ka +L + ++Y++sLq
  CCG031204.1 182 SHSLAERVRREKISERMKTLQRLVPGC----DKVTGKALMLDEIINYVQSLQ 229
                  8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.4E-17176243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.97E-10176233No hitNo description
PROSITE profilePS5088815.993178228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.2E-17178241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-7182229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.7E-11184234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MAAFSYQHPP LFLDSVILPN ITTPIMNMNN SMCWFYDEAG DTNTNSFYQV YPPETFHEAP  60
LDVRFHEFSH HDHSSKVSLS DNETSLTKKQ CTGSSTVVDK LETGEQVTQE VTPVDRKRKT  120
TNGSLNSAQS KDVKEVKSKR QKKCRGDMKQ EEKRPKAEKK VPEEPPTGYV HVRARRGQAT  180
DSHSLAERVR REKISERMKT LQRLVPGCDK VTGKALMLDE IINYVQSLQN QVEFLSMKLA  240
SVNPIFYDFG MGLDAFMIRP ERLSSMSPPL PSLQQCSPIQ PTAFAAAAPP PPPPPRYSYF  300
LLCYSK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115141RKRKTTNGSLNSAQSKDVKEVKSKRQK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3918261e-73FQ391826.1 Vitis vinifera clone SS0AFA9YF22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011042945.10.0PREDICTED: LOW QUALITY PROTEIN: transcription factor bHLH137-like
TrEMBLB9I3Y00.0B9I3Y0_POPTR; Uncharacterized protein
STRINGPOPTR_0012s10670.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41823358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.22e-55bHLH family protein