PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG031190.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NAC

Protein Properties

Length: 219aa MW: 24910 Da PI: 8.4523

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG031190.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	143.2	1.5e-44	14	139	1	127
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk... 95 lppGfrF+Pt+eelv +yLk+k+ + +l++ +vi+ev+++k++Pw+Lp e+e yfFs+++ ky++g+r nra +sgyWkatg dk+++s+ CCG031190.1 14 LPPGFRFQPTEEELVFQYLKRKILSWPLPA-SVIPEVNVCKYDPWELPGD---MEQERYFFSNKEAKYPNGNRVNRASSSGYWKATGLDKQIVSSswk 107 79**************************.99***********54...46799********************************9898 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyr 127 ++++vg+kktLvfy+g+ap+g++tdW ++ CCG031190.1 108 NNHVVGMKKTLVFYRGKAPHGSRTDWQNSSFQ 139 8899********************866665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.88E-51	10	151	IPR003441	NAC domain
PROSITE profile	PS51005	45.271	14	168	IPR003441	NAC domain
Pfam	PF02365	1.5E-19	15	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
METFNFVRDG MSGLPPGFRF QPTEEELVFQ YLKRKILSWP LPASVIPEVN VCKYDPWELP 60 GDMEQERYFF SNKEAKYPNG NRVNRASSSG YWKATGLDKQ IVSSSWKNNH VVGMKKTLVF 120 YRGKAPHGSR TDWQNSSFQM DKWVVCRIFL KNKGTATTET IETRTNDKVG GTQPILLDFM 180 GRDEIVFDSV SSACSSSSSL AGISSNEQDH EQSSSRNFF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-42	14	152	17	166	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-42	14	152	17	166	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-42	14	152	17	166	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-42	14	152	17	166	NO APICAL MERISTEM PROTEIN
3swm_A	2e-42	14	152	20	169	NAC domain-containing protein 19
3swm_B	2e-42	14	152	20	169	NAC domain-containing protein 19
3swm_C	2e-42	14	152	20	169	NAC domain-containing protein 19
3swm_D	2e-42	14	152	20	169	NAC domain-containing protein 19
3swp_A	2e-42	14	152	20	169	NAC domain-containing protein 19
3swp_B	2e-42	14	152	20	169	NAC domain-containing protein 19
3swp_C	2e-42	14	152	20	169	NAC domain-containing protein 19
3swp_D	2e-42	14	152	20	169	NAC domain-containing protein 19
4dul_A	1e-42	14	152	17	166	NAC domain-containing protein 19
4dul_B	1e-42	14	152	17	166	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269\|PubMed:20388856, ECO:0000269\|PubMed:21673078, ECO:0000269\|PubMed:24442717}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269\|PubMed:21673078}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP770013	1e-143	KP770013.1 Populus tomentosa trans-cinnamate 4-monooxygenase (Potri.015G102100) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011043026.1	1e-145	PREDICTED: NAC transcription factor 25-like
Swissprot	Q9FY93	5e-72	NAC83_ARATH; NAC domain-containing protein 83
TrEMBL	B9I3W7	1e-134	B9I3W7_POPTR; Uncharacterized protein
STRING	POPTR_0012s10530.1	1e-133	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF704	34	139

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	5e-72	NAC domain containing protein 83

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]