![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CCG031072.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 322aa MW: 35266.9 Da PI: 6.7976 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 67.3 | 2.9e-21 | 124 | 173 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f+t+e Aa+a+++a+++++g CCG031072.1 124 KYRGVRQRP-WGKWAAEIRDPM----KaARVWLGTFDTPEAAARAYDEAALRFRG 173 8********.**********83....46************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.5E-33 | 123 | 182 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.9E-15 | 124 | 173 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-39 | 124 | 187 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.36E-23 | 124 | 182 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.73E-25 | 124 | 183 | No hit | No description |
PROSITE profile | PS51032 | 25.58 | 124 | 181 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-11 | 125 | 136 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-11 | 147 | 163 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 322 aa Download sequence Send to blast |
MLPDSSRERE MSIMVTALTL VVAGNVPADD SDSSTAFSNN HGDFIHGGLS AKREREEEGG 60 CSEENERLCR AFADDFLHGD SSTAGRATGI SVVTTSTVTP ASTQMTFTPV YEHNETRRDE 120 PQRKYRGVRQ RPWGKWAAEI RDPMKAARVW LGTFDTPEAA ARAYDEAALR FRGSKAKLNF 180 PENVKLRPSP PPSPTANQLT VSDSPSSGLL YLSTSSEFML HSQALHHTQN REISREQVSQ 240 PQLILGVGGY EKQPVSLHDQ MFLSSSFASS NSSSSSTKPS DRMPFPAQKP GEFRPATSSQ 300 SGGNDCQLPA WSGYSHYNSS SR |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-22 | 123 | 184 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011025557.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ABR1-like | ||||
TrEMBL | B9HGC6 | 0.0 | B9HGC6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s07090.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4933 | 32 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G33710.1 | 4e-28 | ERF family protein |