PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG031068.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 516aa    MW: 58037.7 Da    PI: 6.9099
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG031068.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM146.41.5e-451092342128
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                  ppG+rF P+d+elv +yL++kv+g +l+  + i +v +y+++P+ L  +  k +ekewyfF++rd+ky++g+r+nra++ gyWkatg dk++++ +++
  CCG031068.1 109 PPGYRFCPHDHELVIHYLTNKVKGLPLPR-NKIVDVILYQYDPEYLAdRYKKFGEKEWYFFTPRDRKYKNGSRPNRAANGGYWKATGADKNIIH-DEA 204
                  9**************************99.77**************9444455999**************************************.999 PP

          NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                  +vg +k Lv+y+g+apkg kt+W+mhe+r+
  CCG031068.1 205 VVGYRKALVYYTGKAPKGDKTNWIMHEFRV 234
                  ****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.45E-54105261IPR003441NAC domain
PROSITE profilePS5100552.617108261IPR003441NAC domain
PfamPF023653.1E-24109234IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MASLEENSSE SPTMEFTEES MPNVEHSLTT TITPNITSNS SVSPPQILIN STSLPPPRAP  60
VPQPPSATAS PSLALQSPST LTLAAAAVPP PPPRFPNDRD DDHYFNSFPP GYRFCPHDHE  120
LVIHYLTNKV KGLPLPRNKI VDVILYQYDP EYLADRYKKF GEKEWYFFTP RDRKYKNGSR  180
PNRAANGGYW KATGADKNII HDEAVVGYRK ALVYYTGKAP KGDKTNWIMH EFRVNNPLPQ  240
VRNHRDDMRL DDWVLCRIYK KQEKRNNIRN GQRNEEFTNV INEQRNEEHS SGSMDDIDED  300
YLHDHNSNEL AAMGADYAGE IYDMGTGSLE NAFPVFNELS QQPTALRGYS DVINFFPAPA  360
HHSRTLPDTQ VPNLAETFGN PAPVFPVNPD NWPYRQRGYL EEFLNHTNWS QVNIPGQSFD  420
RYSVKPTFLP GNPAPLVNLR PTNTARPSHG LPYMNTAPPA GSLPPINTAH PAGCLPPTNT  480
PFLTRRHPPT NPANSQPTTL TDVGAKPPRQ PPQHLR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-5510726216166NO APICAL MERISTEM PROTEIN
1ut4_B6e-5510726216166NO APICAL MERISTEM PROTEIN
1ut7_A6e-5510726216166NO APICAL MERISTEM PROTEIN
1ut7_B6e-5510726216166NO APICAL MERISTEM PROTEIN
4dul_A6e-5510726216166NAC domain-containing protein 19
4dul_B6e-5510726216166NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011025641.10.0PREDICTED: uncharacterized protein LOC105126470
RefseqXP_011032281.10.0PREDICTED: uncharacterized protein LOC105131144
TrEMBLB9HNX90.0B9HNX9_POPTR; Uncharacterized protein
STRINGPOPTR_0009s05690.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101121642
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52890.15e-57NAC domain containing protein 19