PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG030923.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | SBP | ||||||||
Protein Properties | Length: 821aa MW: 91335.1 Da PI: 6.4704 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 117.6 | 6.3e-37 | 132 | 208 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv++Cead+se+k yhrrh+vC +++a++v+++g+++r+CqqC++fh ls+fDe+krsCrr+L++hn+rrr+k CCG030923.1 132 RCQVPSCEADISELKGYHRRHRVCLGCANATAVVLDGETKRYCQQCGKFHVLSDFDEGKRSCRRKLERHNNRRRRKP 208 6************************************************************************9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.3E-28 | 126 | 194 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 29.368 | 130 | 207 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.44E-33 | 131 | 210 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.5E-27 | 133 | 207 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 821 aa Download sequence Send to blast |
METSSSSSPS PPPPPQLDGD MEFHLPPVST EWDWGDLLDF TVDDQFPLSF DTVVDVTQPI 60 DNPTPEVESQ QLEAPVSDRV RKRDPRLTCS NFLAGIVPCA CPEMDALLLE EEAALPGKKR 120 ARVARAGSSI ARCQVPSCEA DISELKGYHR RHRVCLGCAN ATAVVLDGET KRYCQQCGKF 180 HVLSDFDEGK RSCRRKLERH NNRRRRKPAD SSKGSVGDKE VQGDLLTEDT NCDAEAGKDG 240 LWSSSQMVEK EGLVESEDGH ISALNSDPIS QNVNSDSGVS FTASGDTRMD CGKDDSKIPF 300 SPSICDNKSA YSSMCPTGRI SFKLYDWNPA EFPRRLRHQI FQWLASMPVE LEGYIRPGCT 360 ILTAFLAMPT FMWVKLLEDP ASYLNDLLGS GKMLSNKGRM RVYLNNMIIN VTKEHSVMKV 420 NVKGHAPRLH YVHPTCFEAG KPMEFVVCGS NLLQPKFRFL VSFAGKYLAH DYCVALPQVH 480 TKGGSGLHHQ LYKILTHCIE PNLLGPLFIE VENESGISNF IPVLIGDREV CSEMKIIQQR 540 FDVSHPLIFG SDCEVSAMRQ TAFSELSMDI AWLLMEPSAE NSQQTITSFQ IQRFNSLLSF 600 LLHHESIIIL DKILKNLKIM MDKREVNGMF NDTSDTNTRL LQCYMEHASN ILHKKLKRSE 660 VLKHHLECPG QEYCVSGSCC VSNKLAVVIS SEGLEQGPNG GLGVMANSKC IVRSEEVPLF 720 NRDDVMRKNL INERPKKSCG LVFSNGVLKY RPSVFVIAII AGDCDSSSSY ATINEGVITS 780 ERSYATLNRI GSVHPSELGP SYATLNRIGS EHYTQANWVL A |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul5_A | 8e-46 | 129 | 217 | 2 | 88 | squamosa promoter binding protein-like 7 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 193 | 205 | RRKLERHNNRRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that participates in reprogramming global gene expression during copper deficiency in order to improve the metal uptake and prioritize its distribution to copper proteins of major importance (Probable). Binds directly to 5'-GTAC-3' motifs in the microRNA (miRNA) promoter of the stress-responsive miRNAs miR398b and miR398c to activate their transcription. During copper deficiency, activates the copper transporters COPT1 and COPT2, and the copper chaperone CCH, directly or indirectly via miRNAs. Required for the expression of the miRNAs miR397, miR408 and miR857 (PubMed:19122104). Acts coordinately with HY5 to regulate miR408 and its target genes in response to changes in light and copper conditions (PubMed:25516599). Activates miR857 and its target genes in response to low copper conditions (PubMed:26511915). Involved in cadmium stress response by regulating miR397a, miR398b, miR398c and miR857 (PubMed:27352843). Required for iron homeostasis during copper deficiency (PubMed:22374396). {ECO:0000269|PubMed:19122104, ECO:0000269|PubMed:22374396, ECO:0000269|PubMed:25516599, ECO:0000269|PubMed:26511915, ECO:0000269|PubMed:27352843}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011011019.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 7 | ||||
Swissprot | Q8S9G8 | 0.0 | SPL7_ARATH; Squamosa promoter-binding-like protein 7 | ||||
TrEMBL | A0A2K1YMU5 | 0.0 | A0A2K1YMU5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s02710.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6470 | 34 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18830.1 | 0.0 | squamosa promoter binding protein-like 7 |