PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG030906.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

MYB_related

Protein Properties

Length: 312aa MW: 33972.9 Da PI: 9.0703

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG030906.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.1	5.5e-15	96	141	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++WT+eE+++++ + +++G+g+W+ I+r + k+Rt+ q+ s+ qk+ CCG030906.1 96 LPWTEEEHKRFLVGLQKMGKGDWRGISRNFVKTRTPTQVASHAQKH 141 69******************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.092	90	146	IPR017930	Myb domain
SuperFamily	SSF46689	5.23E-17	91	147	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.3E-16	93	144	IPR006447	Myb domain, plants
SMART	SM00717	7.6E-10	94	144	IPR001005	SANT/Myb domain
CDD	cd00167	2.40E-9	97	142	No hit	No description
Pfam	PF00249	1.7E-11	97	141	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.0E-11	97	141	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MVAGSSSTVS GVEGAAETRP KEILLFGVRV VVDNMRKIVS LNNMNDYEHL NDHEEDEEAA 60 AGASASAAVS GYMSADDTVQ HSSSASERRS QRKRGLPWTE EEHKRFLVGL QKMGKGDWRG 120 ISRNFVKTRT PTQVASHAQK HFLRNSNVNR RRRRSSLFDI TTDMVTETPM EEQQAQGQDS 180 KSNNQAPKSN PPLQANSTTS FPGVLAFPIR RTVSPAVLPL QIESPIMENR SLGQGNQSLN 240 YSTNLVLTVP VVPAPCTAAM PDLNLNLKPV ADSSPLSLDL SSSSDQRASS SRHSAFQTMS 300 SLKNGDNIIV VA

Functional Description ? help Back to Top
Source	Description
UniProt	Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269\|PubMed:21030505}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00149	DAP	Transfer from AT1G19000	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269\|PubMed:21030505}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC216684	0.0	AC216684.1 Populus trichocarpa clone POP030-A02, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011042641.1	0.0	PREDICTED: transcription factor MYB1R1-like
Swissprot	Q2V9B0	6e-67	MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBL	A0A2K1YAB4	1e-177	A0A2K1YAB4_POPTR; Uncharacterized protein
STRING	POPTR_0012s07560.1	1e-177	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4248	31	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19000.2	3e-48	MYB_related family protein

Publications ? help Back to Top
Shin D, et al. Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiol., 2011. 155(1): p. 421-32 [PMID:21030505]