PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG030899.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bHLH

Protein Properties

Length: 258aa MW: 28325.5 Da PI: 6.1533

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG030899.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.3	3.8e-10	153	200	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L++l+P + +k Ka L + ++YI+sLq CCG030899.1 153 SHSLAERARRERISERMKILQDLVPGC----NKVIGKALALDEIINYIQSLQ 200 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.19E-17	146	218	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.08E-8	147	204	No hit	No description
PROSITE profile	PS50888	15.18	149	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.7E-16	149	218	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-7	153	200	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.7E-8	155	205	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MDPPLMNEKS FSAANPSSYS LTEMWPFPPS SSTALGLRMA NLADRDGSVD ESTVTEQRGR 60 NGNGNRKARD LSSEEDDSSI MVSTTTSAHD LNDLNGKRRK ISGSRNENTD SRAEIEANSA 120 ANNKPAEPSS KPSEPPMQDY IHVRSRRGQA TDSHSLAERA RRERISERMK ILQDLVPGCN 180 KVIGKALALD EIINYIQSLQ CQVEFLSMKL EAVNSRMSTS PVIEGLHPKD LGAQPFDATG 240 MIFGPQPTRD YVQGSQSK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011042633.1	0.0	PREDICTED: transcription factor bHLH79-like isoform X1
Swissprot	Q9LV17	1e-76	BH079_ARATH; Transcription factor bHLH79
TrEMBL	B9I330	0.0	B9I330_POPTR; Uncharacterized protein
STRING	POPTR_0012s07470.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1171	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62610.1	3e-66	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]