PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG030855.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 533aa    MW: 58203.7 Da    PI: 6.5363
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG030855.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.98.8e-09341388455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  CCG030855.1 341 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 388
                  8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.08E-10335392No hitNo description
SuperFamilySSF474594.45E-17335406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.663337387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-17337406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.1E-6341388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-10343393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MEKDKLFMSE GANTAAPIWN SCSFGMEMQT DELNCGSGQL ANCFLNPNWD NLLDQSDPFE  60
SALSSIVSSP VASSANASVI SNAGVGGDSV LIRELIGRLG NICNSGEMSP QSYINNNNNS  120
TNTSCYSTPL NSPPKLKRAA RYSCFGSNNL GGLNGQFGLN ESELINRMMP RVEPGKLSRV  180
SSNNSMKVAG SQANVQESNK SSPQDGNLNS DKKFSRLSRP STPENGDSRE ESSLSEQIPG  240
GELSMKSQND ANSRKRKSIP RGKAKETPSP SVSDVKVAAG NDESCAKKSK SEETYGSDKD  300
SAKAMEEENG NQKQKKNNSN PPEPPKDYIH VRARRGQATD SHSLAERVRR EKISERMKFL  360
QDLVPGCNKV TGKAVMLDEI INYVQSLQRQ VEFLSMKLAT VNPKMEINME TFLSKEIFQS  420
RGSMPHGLYP LDSSTPAFPY GYQSQQGLAL QDGMSRNAES QFSMNPLNAA LRRSSSMQLP  480
ALDGFADASH QASAMWQDDL QSVVQMGYGQ NQQQDFQGSV PPTQMKIELS FNQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1252257SRKRKS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011042744.10.0PREDICTED: transcription factor bHLH77-like
TrEMBLA0A2K2BND60.0A0A2K2BND6_POPTR; BHLH family protein
STRINGPOPTR_0002s23650.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25303480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.14e-78bHLH family protein