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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG030676.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 516aa MW: 58037.7 Da PI: 6.9099 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 146.4 | 1.5e-45 | 109 | 234 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 ppG+rF P+d+elv +yL++kv+g +l+ + i +v +y+++P+ L + k +ekewyfF++rd+ky++g+r+nra++ gyWkatg dk++++ +++ CCG030676.1 109 PPGYRFCPHDHELVIHYLTNKVKGLPLPR-NKIVDVILYQYDPEYLAdRYKKFGEKEWYFFTPRDRKYKNGSRPNRAANGGYWKATGADKNIIH-DEA 204 9**************************99.77**************9444455999**************************************.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +vg +k Lv+y+g+apkg kt+W+mhe+r+ CCG030676.1 205 VVGYRKALVYYTGKAPKGDKTNWIMHEFRV 234 ****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.45E-54 | 105 | 261 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 52.617 | 108 | 261 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.1E-24 | 109 | 234 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 516 aa Download sequence Send to blast |
MASLEENSSE SPTMEFTEES MPNVEHSLTT TITPNITSNS SVSPPQILIN STSLPPPRAP 60 VPQPPSATAS PSLALQSPST LTLAAAAVPP PPPRFPNDRD DDHYFNSFPP GYRFCPHDHE 120 LVIHYLTNKV KGLPLPRNKI VDVILYQYDP EYLADRYKKF GEKEWYFFTP RDRKYKNGSR 180 PNRAANGGYW KATGADKNII HDEAVVGYRK ALVYYTGKAP KGDKTNWIMH EFRVNNPLPQ 240 VRNHRDDMRL DDWVLCRIYK KQEKRNNIRN GQRNEEFTNV INEQRNEEHS SGSMDDIDED 300 YLHDHNSNEL AAMGADYAGE IYDMGTGSLE NAFPVFNELS QQPTALRGYS DVINFFPAPA 360 HHSRTLPDTQ VPNLAETFGN PAPVFPVNPD NWPYRQRGYL EEFLNHTNWS QVNIPGQSFD 420 RYSVKPTFLP GNPAPLVNLR PTNTARPSHG LPYMNTAPPA GSLPPINTAH PAGCLPPTNT 480 PFLTRRHPPT NPANSQPTTL TDVGAKPPRQ PPQHLR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-55 | 107 | 262 | 16 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-55 | 107 | 262 | 16 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-55 | 107 | 262 | 16 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-55 | 107 | 262 | 16 | 166 | NO APICAL MERISTEM PROTEIN |
4dul_A | 6e-55 | 107 | 262 | 16 | 166 | NAC domain-containing protein 19 |
4dul_B | 6e-55 | 107 | 262 | 16 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011025641.1 | 0.0 | PREDICTED: uncharacterized protein LOC105126470 | ||||
Refseq | XP_011032281.1 | 0.0 | PREDICTED: uncharacterized protein LOC105131144 | ||||
TrEMBL | B9HNX9 | 0.0 | B9HNX9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0009s05690.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10112 | 16 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52890.1 | 5e-57 | NAC domain containing protein 19 |