PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG030675.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 386aa    MW: 43592.6 Da    PI: 5.8538
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG030675.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM147.47.2e-46842092128
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                  p+G+rF P+++elv +yLk+kv+g +l+  + i +v +y+++P++L +++k+ +e+ewyfF++rdkky++g+r+nra+  gyWkatg dk++++ +++
  CCG030675.1  84 PAGYRFCPHNHELVLHYLKNKVSGLPLPR-NRIVDVSLYQHNPEELAEQFKHyGEREWYFFTPRDKKYRNGTRPNRAAGGGYWKATGADKKIVH-DKA 179
                  89*************************99.77**************9655543788**************************************.999 PP

          NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                   vg +k+Lv+y+g+apkg kt+W+mhe+r+
  CCG030675.1 180 IVGYRKSLVYYNGKAPKGDKTNWMMHEFRM 209
                  ****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-5381236IPR003441NAC domain
PROSITE profilePS5100551.96983236IPR003441NAC domain
PfamPF023651.5E-2384209IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MSCQGDIAFK RPTMKFTEES KPNVQVSATT SGVSNSLSEP FKPSPSTQSS VNSSPPSPRI  60
AGHDHVINPD DNDDDGDSYF NNFPAGYRFC PHNHELVLHY LKNKVSGLPL PRNRIVDVSL  120
YQHNPEELAE QFKHYGEREW YFFTPRDKKY RNGTRPNRAA GGGYWKATGA DKKIVHDKAI  180
VGYRKSLVYY NGKAPKGDKT NWMMHEFRME AAAPPIRNNI NDMRLDEWVL CRIYKKIEKP  240
VKNQEQYSTP KYQLLIGPSD QAAMDGDRNS GTDSWENPWQ QQATPPLAGF DDLFLFCNSY  300
SAAQVPFLPE TFEDPVPMLL SSDFSKGLPE EIWNPPILQF DLAETFNLYG STEDNPQTIT  360
NLPAENLRIN PSPASTGLSV NISNDC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-488223616165NO APICAL MERISTEM PROTEIN
1ut4_B2e-488223616165NO APICAL MERISTEM PROTEIN
1ut7_A2e-488223616165NO APICAL MERISTEM PROTEIN
1ut7_B2e-488223616165NO APICAL MERISTEM PROTEIN
3swm_A1e-488223619168NAC domain-containing protein 19
3swm_B1e-488223619168NAC domain-containing protein 19
3swm_C1e-488223619168NAC domain-containing protein 19
3swm_D1e-488223619168NAC domain-containing protein 19
3swp_A1e-488223619168NAC domain-containing protein 19
3swp_B1e-488223619168NAC domain-containing protein 19
3swp_C1e-488223619168NAC domain-containing protein 19
3swp_D1e-488223619168NAC domain-containing protein 19
3ulx_A2e-488223614168Stress-induced transcription factor NAC1
4dul_A2e-488223616165NAC domain-containing protein 19
4dul_B2e-488223616165NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011025548.10.0PREDICTED: NAC domain-containing protein 102-like
RefseqXP_011032044.10.0PREDICTED: NAC domain-containing protein 102-like
TrEMBLB9HNX80.0B9HNX8_POPTR; Uncharacterized protein
STRINGPOPTR_0009s05700.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101121642
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.14e-54NAC family protein