PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG030667.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 481aa    MW: 52524.6 Da    PI: 7.5625
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG030667.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.44.5e-31131188260
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                  dDgy+WrKYGqK+vkgsefprsYY+Ct+++C+vkk  e s+ d++++ei+Y+g+H+h+k
  CCG030667.1 131 DDGYSWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFESSH-DGQITEIIYKGTHDHPK 188
                  8*************************************999.***************85 PP
2WRKY106.61.3e-33296354159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  CCG030667.1 296 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 354
                  59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.378125189IPR003657WRKY domain
SuperFamilySSF1182903.01E-24128189IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.1E-26129189IPR003657WRKY domain
SMARTSM007741.2E-32130188IPR003657WRKY domain
PfamPF031065.1E-24131187IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.8E-38281356IPR003657WRKY domain
SuperFamilySSF1182901.7E-29288356IPR003657WRKY domain
PROSITE profilePS5081138.825291356IPR003657WRKY domain
SMARTSM007743.1E-39296355IPR003657WRKY domain
PfamPF031062.7E-26297354IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MDNINSRSEV SDGGARYKLI SPAKLPISRS ACTMISPGLS STSFLESPVL LSNVKMPVLC  60
SHIMSLCHAS SCLCSIGLVG FTDMTAKKLE VSSVHAEVDL DELNQMGLSS SGLRALQSDN  120
KTGSAPTVSS DDGYSWRKYG QKHVKGSEFP RSYYKCTHPN CEVKKLFESS HDGQITEIIY  180
KGTHDHPKPQ PSRRYASGSC LFMQEERFDK FSSLPIQDDK SPGAYGQVSH AIEQDGAPEL  240
SPGTTNDDTG ECAEDDKDPV SKRRRLDAGG FDVAPVIKPI REPRVVVQTL SEVDILDDGY  300
RWRKYGQKVV RGNPNPRSYY KCTNAGCPVR KHVERASHDP KAVITTYEGK HNHDVPTART  360
NSHDTGPSAV NGTSRTRPDK NETISLDLGV GISSRSENLS SDQQQALHAE LVRFENQASS  420
GSSFRIVHAS PIAAYYGVLN GGMNQYGSRQ IPSEGRSIEI PPLNRSSYPY PQNVGSLLTG  480
P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-37131356877Probable WRKY transcription factor 4
2lex_A6e-37131356877Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1261265KRRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2080470.0AC208047.1 Populus trichocarpa clone JGIACSB05-H10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011011135.10.0PREDICTED: probable WRKY transcription factor 20 isoform X2
SwissprotQ93WV01e-158WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A2I4KKZ50.0A0A2I4KKZ5_POPTR; WRKY family protein
TrEMBLA0A3N7FUJ40.0A0A3N7FUJ4_POPTR; Uncharacterized protein
STRINGPOPTR_0001s37260.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39463463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.21e-174WRKY family protein