PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG030604.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bHLH

Protein Properties

Length: 389aa MW: 44096.9 Da PI: 5.8493

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG030604.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.8	3.5e-12	197	248	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+ +N+ ++ Lr+ +P++ + ++ + a+i A+e++k+L+ CCG030604.1 197 QRMNHIAVERKRRRLMNDHLNSLRSFMPPS---YVQRGDQASIIGGAIEFVKELE 248 79**************************...9****************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.56E-12	195	252	No hit	No description
PROSITE profile	PS50888	14.621	196	247	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.07E-16	196	263	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.4E-10	197	248	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.7E-13	197	259	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.2E-9	202	253	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence Send to blast
MERLQGPINP CFLGEHNLDF ECLDQGFINT ESLRFGEEGP YFSSPIFDEK MPFLQMLQTV 60 ETPPTFPFKE PSFQTLLKLQ HLKKPWNMNN YYMPETESQV QPPELESCVT HDIFDLHSPV 120 KSETKELPNP HSNSCLEGVS PEPAEPYSGS LNPWGTQPQT VPNIKTQFSK STTIITRERR 180 KRKRTRPTKN KEEIESQRMN HIAVERKRRR LMNDHLNSLR SFMPPSYVQR GDQASIIGGA 240 IEFVKELEQL LQSLEAQKRM KEIGAGSTIG ISSNQYFTSP PQSDNLAEEG GKCEEIRTVK 300 KKSEAAEIEV TAVQNHVNLK IKCQRSLGQL VRAIVALEEL SLTVLHLNVS SSQATILYSF 360 NLKLEDDCEL GSTDEVAEAV HQIFSSFNG

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence Send to blast

MERLQGPINP CFLGEHNLDF ECLDQGFINT ESLRFGEEGP YFSSPIFDEK MPFLQMLQTV  60
ETPPTFPFKE PSFQTLLKLQ HLKKPWNMNN YYMPETESQV QPPELESCVT HDIFDLHSPV  120
KSETKELPNP HSNSCLEGVS PEPAEPYSGS LNPWGTQPQT VPNIKTQFSK STTIITRERR  180
KRKRTRPTKN KEEIESQRMN HIAVERKRRR LMNDHLNSLR SFMPPSYVQR GDQASIIGGA  240
IEFVKELEQL LQSLEAQKRM KEIGAGSTIG ISSNQYFTSP PQSDNLAEEG GKCEEIRTVK  300
KKSEAAEIEV TAVQNHVNLK IKCQRSLGQL VRAIVALEEL SLTVLHLNVS SSQATILYSF  360
NLKLEDDCEL GSTDEVAEAV HQIFSSFNG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	178	183	RRKRKR
2	205	209	RKRRR
3	206	210	KRRRL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011025361.1	0.0	PREDICTED: transcription factor bHLH67-like
TrEMBL	A0A2K2BKJ0	0.0	A0A2K2BKJ0_POPTR; Uncharacterized protein
STRING	POPTR_0014s10190.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6894	34	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46810.1	1e-71	bHLH family protein