PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG030593.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 651aa    MW: 71852.1 Da    PI: 4.9383
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG030593.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM142.23e-441172453128
          NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 
                  +G+rF+Ptdeelv++yLk+k+ g++le   +i+e++++++ePwdLp k ++k+++  wyfF++rd ky++++r+nr tk+g+Wk tgk+ +v+s+ ++
  CCG030593.1 117 VGYRFRPTDEELVSNYLKPKLLGDDLEDLLIIAEIKVCNHEPWDLPvKsEIKSDDAVWYFFCPRDLKYSNSRRSNRRTKAGFWKPTGKTIKVKSRrNK 214
                  7************************999899**************96358888999*************************************99778 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                  e++g+kktLvfy+  +pk+e+t W++hey++
  CCG030593.1 215 EVIGTKKTLVFYRSASPKAERTAWIIHEYEV 245
                  88***************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100546.855115281IPR003441NAC domain
SuperFamilySSF1019415.36E-46115281IPR003441NAC domain
PfamPF023655.2E-25117244IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MSICHISTPS CFSLLLTTSP GRLLTLCSQY RISPPSPVYK HTQSLSHRTE SPTPLQGKKK  60
CHPSVSDSAG PSFLPFNPKP HLNSGVAFFP VLGSGMNSKI QSVMKNPIDG MPSAPAVGYR  120
FRPTDEELVS NYLKPKLLGD DLEDLLIIAE IKVCNHEPWD LPVKSEIKSD DAVWYFFCPR  180
DLKYSNSRRS NRRTKAGFWK PTGKTIKVKS RRNKEVIGTK KTLVFYRSAS PKAERTAWII  240
HEYEVAVSDS SFSNLIIHSM TRGFHFQQVQ GEYVLCKLKK KLDGKTGKGV SISGFEAEPS  300
CSMAFDFENH NRSELTANSA CVESESSNHL ASDFENPNSN ELPTNLAQEV SELSCFSTTN  360
NQNLNELMSN LAYDGSGLHH SMATNFGNPN SNELISSSSY DGSGSLHSMA SNYEIQYRNE  420
LISNSAYDGS GGLLHSMTSN YEIQYLNERI FNSAYNGSEQ SHSMASDSEN QNLMDTTFVF  480
PGYSLSKPPE QQVPSPSENW FTTSDFEDPL SPLQPEGETG PSMEMPFQFT NCLLASDFEN  540
QNIDKETDIS ALDEGKRSSP TVMPLDLENE NPWGKIDMPT LEGGGLCCLM ASPGNSPADA  600
SFLQFLQLSP RQLELEAFLE LGDILNSPPQ PPASTITEEV PNYTGSGSVS Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-2811824518140Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011025323.10.0PREDICTED: NAC domain-containing protein 69-like
TrEMBLA0A2K2BKS20.0A0A2K2BKS2_POPTR; Uncharacterized protein
STRINGPOPTR_0002s18320.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2834433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.31e-38NAC transcription factor-like 9