PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

CCG030519.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C2H2

Protein Properties

Length: 431aa MW: 47691.6 Da PI: 9.6011

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG030519.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.3	0.00012	290	312	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y Cp C+k + ++ ++ H+ tH CCG030519.1 290 YICPRCKKICETSQTFAAHMLTH 312 89*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.19E-5	279	313	No hit	No description
PROSITE pattern	PS00028	0	292	312	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence Send to blast
MASNNFNVSS SSIVHENSLV LSLNSNLAQD HVDGHGRIIP QSLAPTIAVQ PNNLFVPQRA 60 GLGQIAMGQR LSEVRRNHVS SLSVRIHTII EYLPTEQNQI EALPLHPTSD YTVTEIPRTT 120 QFLPPASPRE LIVAPNHNNV HLQSLNPNGG FRIQGQPNFQ NHNLTMSNQV NQHNAYLPYS 180 PPNRQMINFM NLDHLNHSHG NNDGVVLNPE PLSVYAPPGI SWARNPNLNL GQNQNLETSQ 240 FDIDQVRINP RDEARNIPDN QSSTSSEDEE EMGLDDGVTH SLPHQKYGPY ICPRCKKICE 300 TSQTFAAHML THYRVENKEQ RKRRLAAKNK KKNLHQIHSR GNGLTISPLG TENLQEVHSR 360 GIGLTISPVG TKSKVPLKVY VRRKKAAGGK AEMATSKRVV EDKAQKGQGN TVLDEASSSS 420 PVGLVNKGVP M

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence Send to blast

MASNNFNVSS SSIVHENSLV LSLNSNLAQD HVDGHGRIIP QSLAPTIAVQ PNNLFVPQRA  60
GLGQIAMGQR LSEVRRNHVS SLSVRIHTII EYLPTEQNQI EALPLHPTSD YTVTEIPRTT  120
QFLPPASPRE LIVAPNHNNV HLQSLNPNGG FRIQGQPNFQ NHNLTMSNQV NQHNAYLPYS  180
PPNRQMINFM NLDHLNHSHG NNDGVVLNPE PLSVYAPPGI SWARNPNLNL GQNQNLETSQ  240
FDIDQVRINP RDEARNIPDN QSSTSSEDEE EMGLDDGVTH SLPHQKYGPY ICPRCKKICE  300
TSQTFAAHML THYRVENKEQ RKRRLAAKNK KKNLHQIHSR GNGLTISPLG TENLQEVHSR  360
GIGLTISPVG TKSKVPLKVY VRRKKAAGGK AEMATSKRVV EDKAQKGQGN TVLDEASSSS  420
PVGLVNKGVP M

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	326	332	AKNKKKN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011025400.1	0.0	PREDICTED: uncharacterized protein LOC105126279
TrEMBL	B9GYK7	0.0	B9GYK7_POPTR; Uncharacterized protein
STRING	POPTR_0003s21710.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF18940	6	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42640.1	2e-15	C2H2 family protein