PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG030470.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB | ||||||||
Protein Properties | Length: 324aa MW: 35680.9 Da PI: 8.4705 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.4 | 3.3e-18 | 35 | 82 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEdell++++k+ G g+W+t +++ g+ R++k+c++rw +yl CCG030470.1 35 RGPWTPEEDELLANYIKKEGEGRWRTLPKKAGLLRCGKSCRLRWMNYL 82 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 50.1 | 6.5e-16 | 88 | 133 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l CCG030470.1 88 RGQISPDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 133 67889*****************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.779 | 30 | 82 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.5E-29 | 32 | 129 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.3E-14 | 34 | 84 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.6E-16 | 35 | 82 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-22 | 36 | 89 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.93E-11 | 37 | 82 | No hit | No description |
PROSITE profile | PS51294 | 25.239 | 83 | 137 | IPR017930 | Myb domain |
SMART | SM00717 | 8.6E-15 | 87 | 135 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.1E-15 | 88 | 133 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-25 | 90 | 138 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.67E-12 | 92 | 133 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
MRKPTSSTAT AEAAAAGGGA AAKSTPCCIK VGLKRGPWTP EEDELLANYI KKEGEGRWRT 60 LPKKAGLLRC GKSCRLRWMN YLRPSVKRGQ ISPDEEDLIL RLHRLLGNRW SLIAGRIPGR 120 TDNEIKNYWN THLSKKLISQ GIDPRTHKPL INPQSFDQSK PSSSKANHLQ ESLKEPIKIA 180 SSGLEITTSG SAHIISNKEN GYFQNNSNAH LGDQYHTDHF IASRGYTSLL NYDGSFGTDL 240 RGNQRLGNGE AEDFNSGTED VFSFLNSLIN EEAFQQHQIC NEPNVNSALA STDPLFPIAA 300 ATFGISTGWE STFVPPALDQ NDSK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-25 | 33 | 137 | 5 | 108 | B-MYB |
1mse_C | 1e-25 | 33 | 137 | 2 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 1e-25 | 33 | 137 | 2 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF811025 | 0.0 | KF811025.1 Populus tomentosa putative R2R3 MYB transcription factor MYB006 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011025148.1 | 0.0 | PREDICTED: transcription repressor MYB5-like | ||||
Swissprot | Q38850 | 1e-80 | MYB5_ARATH; Transcription repressor MYB5 | ||||
TrEMBL | B9GY74 | 0.0 | B9GY74_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s21120.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3894 | 30 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 2e-80 | myb domain protein 5 |
Publications ? help Back to Top | |||
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