PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG030395.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NAC

Protein Properties

Length: 375aa MW: 43376.5 Da PI: 6.6271

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG030395.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	177.7	3e-55	7	137	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 +ppGfrFhPtdeelv++yL+kkv++++++l +vik+v++yk+ePwdL+ + ++ + e++ewyfFs++dkky+tg+r+nrat +g+Wkatg+dk+++s CCG030395.1 7 VPPGFRFHPTDEELVHYYLRKKVNSRTIDL-DVIKDVELYKIEPWDLQgElcRIGTeEQNEWYFFSHKDKKYPTGTRTNRATVAGFWKATGRDKAIYS 103 69**************************.9***********9536644442556********************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrle 129 k+ l+g++ktLvfykgrap+g+k+dW+mheyrle CCG030395.1 104 -KHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 137 .8899**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.24E-58	5	168	IPR003441	NAC domain
PROSITE profile	PS51005	57.802	7	168	IPR003441	NAC domain
Pfam	PF02365	3.0E-28	8	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MNSFTHVPPG FRFHPTDEEL VHYYLRKKVN SRTIDLDVIK DVELYKIEPW DLQGELCRIG 60 TEEQNEWYFF SHKDKKYPTG TRTNRATVAG FWKATGRDKA IYSKHDLIGM RKTLVFYKGR 120 APNGQKSDWI MHEYRLETDE NGTPQASIII KNSSFSEEGW VVCRVFKKRI PTMPKVSEHE 180 SVCWYDDQVA FMHDLDSPKQ NFQPDLGYQF PYSCKKELDF QYQIPHDHFL QLPLLQSPKL 240 LQSAPTLSCN SINAAYGLDI NQTSTLQSST LTQEDQVQQT REQRFPTIYG NNNSNHEQAV 300 DQVTDWRVLD KFVASQLSHE DVIKETNHPN ASNNIFNTSS VQAANILVRH LNKQEASVQE 360 NASTSTSSCQ IDLWK

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MNSFTHVPPG FRFHPTDEEL VHYYLRKKVN SRTIDLDVIK DVELYKIEPW DLQGELCRIG  60
TEEQNEWYFF SHKDKKYPTG TRTNRATVAG FWKATGRDKA IYSKHDLIGM RKTLVFYKGR  120
APNGQKSDWI MHEYRLETDE NGTPQASIII KNSSFSEEGW VVCRVFKKRI PTMPKVSEHE  180
SVCWYDDQVA FMHDLDSPKQ NFQPDLGYQF PYSCKKELDF QYQIPHDHFL QLPLLQSPKL  240
LQSAPTLSCN SINAAYGLDI NQTSTLQSST LTQEDQVQQT REQRFPTIYG NNNSNHEQAV  300
DQVTDWRVLD KFVASQLSHE DVIKETNHPN ASNNIFNTSS VQAANILVRH LNKQEASVQE  360
NASTSTSSCQ IDLWK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-46	6	169	14	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB599936	0.0	AB599936.1 Populus trichocarpa PtVNS05 mRNA for transcription factor, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011010923.1	0.0	PREDICTED: NAC domain-containing protein 7-like
Swissprot	Q9FWX2	1e-135	NAC7_ARATH; NAC domain-containing protein 7
TrEMBL	F1T110	0.0	F1T110_POPTR; NAC family protein
STRING	POPTR_0015s14770.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1269	33	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	1e-126	NAC 007

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]