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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG030376.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | TALE | ||||||||
Protein Properties | Length: 679aa MW: 73786.1 Da PI: 7.5383 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.3 | 1.5e-09 | 378 | 415 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + CCG030376.1 378 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 415 554459******************************88 PP | |||||||
2 | BELL | 122.2 | 2.2e-39 | 242 | 313 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqe+q+kkak +sll+eVd+rY+qy++q+q+vissFe++ag+gsak Yt+lAlk+iS++FrcLkdai++qi CCG030376.1 242 ERQEIQMKKAKFISLLDEVDQRYRQYHHQMQIVISSFEQAAGIGSAKTYTALALKTISKQFRCLKDAITGQI 313 79*********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 3.7E-65 | 166 | 311 | IPR006563 | POX domain |
Pfam | PF07526 | 1.2E-49 | 171 | 310 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.195 | 356 | 419 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.3E-9 | 359 | 423 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.80E-12 | 359 | 420 | No hit | No description |
SuperFamily | SSF46689 | 7.7E-17 | 360 | 426 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.2E-29 | 362 | 425 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.8E-18 | 376 | 415 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009610 | Biological Process | response to symbiotic fungus | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010197 | Biological Process | polar nucleus fusion | ||||
GO:0010201 | Biological Process | response to continuous far red light stimulus by the high-irradiance response system | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 679 aa Download sequence Send to blast |
MATYFHGNPD FQAAAASAEG LQTLVLMNPT YVQYSNNPPP PPSNNFVFLN AAASAAASNS 60 LSPPPHLSGH APPNAQQFVG IPLDPNSHDA SNLHGFIPRI HYNLYNPIDP PPTARDTPRA 120 QQGLSLSLSS QKQGCFGSQA QTVSGEDIRV SGGSVSSGSG VTNGVLGMQG VLLSSKYLKA 180 AQELLDEVVS VNNNDIKSEL SKKSNGIGSN TSNKVVGESL AGEGSGGGDV SGKRGPELST 240 AERQEIQMKK AKFISLLDEV DQRYRQYHHQ MQIVISSFEQ AAGIGSAKTY TALALKTISK 300 QFRCLKDAIT GQIKAANKSL GEEDCMGGKI EGSRLKFVDH HLRQQRALQQ LGMIQHNAWR 360 PQRGLPERSV SVLRAWLFEH FLHPYPKDSD KHMLAKQTGL TRSQVSNWFI NARVRLWKPM 420 VEEMYTEEIK EQEQDGSEDK TSKSDHNEDS ASRSVLQEKG SASENQTRNF KSLDNSPDAP 480 SAISMPTAST SPVGGNVRNQ SGFSFIGSSE LEGITQRSPK KRRSNDLIQS STSVPSINMD 540 IKPGEANNEQ VSVKFGSERQ SRDGYSFMGG QTNFIGGFGQ YPIGEIGRFD GEQFTPRFSG 600 NGVSLSLGLP HCENLSLSGT HQTFLPNQNI QLGRRVEIGE ANEFGAINTS TPHSSTAYDS 660 IDMQNRKRFI AQLLPDFVA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 2e-16 | 365 | 422 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 2e-16 | 365 | 422 | 1 | 58 | Homeobox protein Meis1 |
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Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT028867 | 0.0 | CT028867.1 Poplar cDNA sequences. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011042587.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 1 | ||||
Refseq | XP_011042589.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 1 | ||||
Refseq | XP_011042590.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 1 | ||||
Refseq | XP_011042591.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 1 | ||||
Refseq | XP_011042592.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 1 | ||||
Refseq | XP_011042593.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 1 | ||||
Swissprot | Q9SJ56 | 0.0 | BLH1_ARATH; BEL1-like homeodomain protein 1 | ||||
TrEMBL | B9IIL1 | 0.0 | B9IIL1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0016s07040.3 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1627 | 34 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35940.3 | 1e-167 | BEL1-like homeodomain 1 |
Publications ? help Back to Top | |||
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