PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG030366.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | bHLH | ||||||||
Protein Properties | Length: 467aa MW: 52200.3 Da PI: 5.4121 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.8 | 4e-13 | 260 | 306 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h + Er+RR+++N ++ Lr l+P++ K++ a+++ +A++YIk+L CCG030366.1 260 TKHFATERQRREHLNGKYTALRNLVPNP-----SKNDRASVVGEAIDYIKEL 306 68*************************9.....7****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.459 | 257 | 306 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.37E-13 | 258 | 311 | No hit | No description |
Pfam | PF00010 | 1.1E-10 | 260 | 306 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-13 | 260 | 315 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 8.51E-16 | 260 | 323 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.2E-11 | 263 | 312 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0048658 | Biological Process | anther wall tapetum development | ||||
GO:0052543 | Biological Process | callose deposition in cell wall | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 467 aa Download sequence Send to blast |
MYVETACFEP NNSMVEEVTD DGFCHAIPLM AGNSTTNSFE EHLKLSMEEF SNHYPQEESA 60 AAASMEEIQL QHHMAFSNNN TNHHLMQHYP TQLLSYDHSS NWDPNIIQFQ EMHQVLDQNS 120 SFDATANTPS SLPPDLLNLF NLPRCTSTST MLPNSSISFT NPAHKTPLGF MGVDNTSARF 180 DPYTLAPQPH LFRELVQSLP PQGYTLPTPL FGGGQGDDHV DGQIGGGLSY QDGDHGDGIF 240 EFTDEMACIG KGIRKTGKVT KHFATERQRR EHLNGKYTAL RNLVPNPSKN DRASVVGEAI 300 DYIKELLRTV QELKLLVEKK RCGRERSKWR KTEEDGGVDV LDNSNIKVEP DQSAYSNGSL 360 RSSWLQRKSK DTEVDVRLIE DEVTIKLVQR KRVNCLLYVS KVLDELQLDL HHAAGGLIGD 420 YYSFLFNTKI NEGSCVYASA VANKLIEVVD RQYASSTTTV PAAGNCY |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011042573.1 | 0.0 | PREDICTED: transcription factor bHLH91-like | ||||
TrEMBL | B9IIJ6 | 0.0 | B9IIJ6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0016s06900.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3743 | 32 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31220.1 | 3e-82 | bHLH family protein |