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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG030357.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | YABBY | ||||||||
Protein Properties | Length: 169aa MW: 18529.8 Da PI: 8.8521 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 167.9 | 7e-52 | 2 | 160 | 2 | 170 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvP...stslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsv 96 +++ +se+vCyv+CnfCntil+v++P +++l+++vtvrCG C++lls+n ++++ + + ++++ ++ ++s+st + CCG030357.1 2 SLDIASERVCYVHCNFCNTILVVNIPcsaNSTLLNTVTVRCGRCANLLSLNTGSLL--QTSHPQ-----------NSHKQNLLYQDLSGGSQSSSTGN 86 56789*********************333346899**************7766554..444443...........22233333333444455566666 PP YABBY 97 sseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +++ l+ +++e+ r+ + k+qr Psaynrfikeei+rik +nP+ishreafs aaknWah+P+ h gl CCG030357.1 87 RVSALEPSQNEQPGRTVAMHAATGKKQRTPSAYNRFIKEEIRRIKEKNPEISHREAFSNAAKNWAHLPHTHSGL 160 66677778888888888889999************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.5E-60 | 6 | 160 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 2.36E-8 | 104 | 155 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 2.9E-6 | 110 | 155 | IPR009071 | High mobility group box domain |
CDD | cd01390 | 8.95E-6 | 114 | 154 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MSLDIASERV CYVHCNFCNT ILVVNIPCSA NSTLLNTVTV RCGRCANLLS LNTGSLLQTS 60 HPQNSHKQNL LYQDLSGGSQ SSSTGNRVSA LEPSQNEQPG RTVAMHAATG KKQRTPSAYN 120 RFIKEEIRRI KEKNPEISHR EAFSNAAKNW AHLPHTHSGL TLNDTGMDA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011042560.1 | 1e-124 | PREDICTED: putative axial regulator YABBY 2 | ||||
Swissprot | Q9XFB0 | 1e-48 | YAB2_ARATH; Putative axial regulator YABBY 2 | ||||
TrEMBL | A0A3N7G523 | 1e-109 | A0A3N7G523_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0016s06760.1 | 1e-119 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1124 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 5e-51 | YABBY family protein |
Publications ? help Back to Top | |||
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