PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG030251.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TALE
Protein Properties Length: 326aa    MW: 37091.5 Da    PI: 6.1938
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG030251.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox231.4e-072773092254
                  SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                   +yp++e++++L +++gL+ +q+ +WF N+R +
  CCG030251.1 277 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 309
                  59*****************************87 PP
2ELK22.33.1e-08230251122
          ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                  ELKh+L++ Y+++++++++E++
  CCG030251.1 230 ELKHELKQDYKEKIVDIREEIL 251
                  9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.4E-1765109IPR005540KNOX1
PfamPF037903.4E-1767108IPR005540KNOX1
SMARTSM012562.4E-26118173IPR005541KNOX2
PfamPF037915.8E-19122172IPR005541KNOX2
PfamPF037891.5E-4230251IPR005539ELK domain
PROSITE profilePS512139.865230250IPR005539ELK domain
SMARTSM011880.0049230251IPR005539ELK domain
PROSITE profilePS5007111.677250313IPR001356Homeobox domain
SMARTSM003896.0E-11252317IPR001356Homeobox domain
SuperFamilySSF466895.13E-16252314IPR009057Homeodomain-like
CDDcd000861.11E-10253312No hitNo description
Gene3DG3DSA:1.10.10.605.1E-25257313IPR009057Homeodomain-like
PfamPF059201.4E-17270309IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MAFQLPQHHH ISASPSTGPT WLSNAVLRRH DDVLTQTRIE KPENNTNNGS EEELTDSVSD  60
NWERAKCKAE ILGHPLYEQL LSAHVACLRI ATPVDQLARI DTQLAQSQDV LAKYSGVGRS  120
HVVDEKELDQ FMTHYVLLLC SFKDQLQQHV RVHAMEAVMA CWELEQSLQS LTGVSPGEGT  180
GATMSDDDDD QADSDANLYD GNLDGLDTMG FGPLVPTETE RSLMERVRQE LKHELKQDYK  240
EKIVDIREEI LRKRRAGKLP GDTTSLLKAW WQTHSKWPYP TEEDKARLVQ ETGLQLKQIN  300
NWFINQRKRN WHSSPSGSTS KSKRKK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1306325RKRNWHSSPSGSTSKSKRKK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7699990.0KP769999.1 Populus tomentosa Homeobox protein knotted-1-like 3 (Potri.006G190000) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011033486.10.0PREDICTED: homeobox protein knotted-1-like LET12 isoform X1
RefseqXP_011033487.10.0PREDICTED: homeobox protein knotted-1-like LET12 isoform X2
SwissprotP480001e-165KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLB9HAN90.0B9HAN9_POPTR; Uncharacterized protein
STRINGPOPTR_0018s12200.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-154KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]