PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG030221.2
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 388aa    MW: 40510.9 Da    PI: 6.3958
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG030221.2genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.22.2e-06208233530
                  HHHHHHHHHHHHHHHHHHHHCTSCCC CS
          HLH   5 hnerErrRRdriNsafeeLrellPka 30 
                  h+++Er RR ri +++  L+el+P+a
  CCG030221.2 208 HSIAERLRRGRIAERMKALQELVPNA 233
                  99***********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.41E-7201238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.19E-4201242No hitNo description
PROSITE profilePS508889.636203258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-6205237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MQGMNSLLNP SSQIPLQDLQ NQQIQNSHFD PNSSSNDDFL EQMLSAIPSC SWADPKSPWD  60
LNPPTNLPFP INNNSSSAKP RDLFNETPPS NTDNNNVGFQ DNFDESVILA SKLRQHQISG  120
GSGAAAATKM KLQQQLLMAA ARGGLSQNDD IDVSSTHGGA MQSPNLGAQG AATTAVMNQP  180
QASGSNGGAP AQPRQRVRAR RGQATDPHSI AERLRRGRIA ERMKALQELV PNANKVLSMS  240
RLGGAAAVAP LVADMSSEAG GDCIQANANG GSIARTTNGS QTASTNDSSL TVTEHQVAKL  300
MEEDMGSAMQ YLQGKGLCLM PISLATAIST ATCHNRTSGI INSHNQLLQS NVEGPTSPSM  360
SVLTVQSATM GNGGGDGVAK DAASVSKP
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1479394e-95EF147939.1 Populus trichocarpa clone WS0126_B22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011033445.10.0PREDICTED: transcription factor bHLH66-like
SwissprotQ9ZUG93e-64BH066_ARATH; Transcription factor bHLH66
TrEMBLA0A2K2A4B60.0A0A2K2A4B6_POPTR; Uncharacterized protein
STRINGPOPTR_0006s20070.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47783352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.12e-51LJRHL1-like 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]