PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG030165.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 195aa    MW: 22786.6 Da    PI: 9.3539
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG030165.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM90.43.1e-28521792128
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeek.ewyfFskrdkkyatgkrknr.atksgyWkatgkdkevlsk. 95 
                  p+G rF+P+d+el+++yL+++  g    +e ++ ++d+yk++P+dLp  kv+ + + ++y F++  k + +g+rk +  t +g Wk   +  +++++ 
  CCG030165.1  52 PVGWRFNPSDKELLDYYLRARKYGGGAICEGIFGDFDLYKYDPQDLPqGKVHRHCNgRMYIFTPIYKVHINGSRKGKrNTPNGHWKMNSSPIPIIENn 149
                  79*****************9988888777789***************546655555588************99986659***************9987 PP

          NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                  +g+++g++ ++vf+++   + +kt+W+mhe+rl
  CCG030165.1 150 DGQTIGTRSSFVFFDK---DKRKTRWLMHEFRL 179
                  8999**********43...3358********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.75E-2944186IPR003441NAC domain
PROSITE profilePS5100533.3751195IPR003441NAC domain
PfamPF023653.2E-1752179IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MSAPISKTSE RNWDVDRDMQ SDGEPRRHDQ VREAFRSLST SANWMDWFKF GPVGWRFNPS  60
DKELLDYYLR ARKYGGGAIC EGIFGDFDLY KYDPQDLPQG KVHRHCNGRM YIFTPIYKVH  120
INGSRKGKRN TPNGHWKMNS SPIPIIENND GQTIGTRSSF VFFDKDKRKT RWLMHEFRLG  180
DPPTQTIENE GMVCN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-195217916140Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002308423.11e-134NAC domain-containing protein 18
TrEMBLB9HBF61e-133B9HBF6_POPTR; Uncharacterized protein
STRINGPOPTR_0006s19350.11e-134(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2320334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.15e-19NAC family protein