PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG030123.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HB-other
Protein Properties Length: 663aa    MW: 73405.1 Da    PI: 6.3548
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG030123.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox603.9e-192782156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 ++  +++t +q+ +Le++F+++++p++++r++L+++lgL+ +q+k+WFqNrR++ k
  CCG030123.1 27 KKAYHRHTCQQILQLEKFFKECPHPNEKQRRQLSRELGLEAKQIKFWFQNRRTQAK 82
                 6778899**********************************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.09E-181484IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-201586IPR009057Homeodomain-like
PROSITE profilePS5007117.22484IPR001356Homeobox domain
SMARTSM003896.8E-162688IPR001356Homeobox domain
PfamPF000461.2E-162782IPR001356Homeobox domain
CDDcd000861.18E-162785No hitNo description
PROSITE patternPS0002705982IPR017970Homeobox, conserved site
PROSITE profilePS5084814.288225334IPR002913START domain
SuperFamilySSF559616.78E-5226338No hitNo description
SuperFamilySSF559611.34E-10442626No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 663 aa     Download sequence    Send to blast
MELQMGNNGG ASGDEHYEDF NSGNKGKKAY HRHTCQQILQ LEKFFKECPH PNEKQRRQLS  60
RELGLEAKQI KFWFQNRRTQ AKAQSERSDN SVLRTENERI HCENLAIREA MKNVICPACG  120
GPPFGEEECQ LNLQKLRQEN DRLREEASLD FFFNSPFHEK VSILLAKFIG KPKSQIDLLT  180
SDAGSSQGEL PTFVQNQRMG NPGIDLERNP GSDISHLAYR LEGIPDMENA LMAETAAGAM  240
DELIGLLRVN EPFWIKSPSD GRFVLERLIY ERIYPRAAHF ISCNARVESS KDSATVTMPG  300
MDLVDMFLDP NKWVDLFPTI VTEARTIQVL EAGTVGNRHG SLQMIIWVEH VEANDRIQTH  360
RLYRDLICGS YAYGAERWIA SLQRICERLA FSTAVPPREL GGVVTSHEGR KSIVNLAHRM  420
VKIFSSSLGM SGKLDFRQLS EGNNSGVRVA ICKNAEQGQP IGTVVSAATS FWLPLSPQNV  480
FNFFKAEKSR TQWDILSNGN PVREISHISN GADPGNCISI IRVISHPFSP ILPFIPAENN  540
MLILQESCTD SSVSMVVYAP VGIPAMNVAI SGEDSSIIPI LPSGFVISGD GRMDTRGNNS  600
SFTSYTGSNS GGSLLTIAFQ ILVSGPNSSS SAEFNMESVA TVNTLISTTV LKIKSAFNCS  660
DFD
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2755391e-162GU275539.1 Populus balsamifera isolate NWL07 haplotype B unknown gene, partial sequence.
GenBankGU2755401e-162GU275540.1 Populus balsamifera isolate POR11 haplotype A unknown gene, partial sequence.
GenBankGU2755411e-162GU275541.1 Populus balsamifera isolate POR11 haplotype B unknown gene, partial sequence.
GenBankGU2755421e-162GU275542.1 Populus balsamifera isolate GIL14 haplotype A unknown gene, partial sequence.
GenBankGU2755431e-162GU275543.1 Populus balsamifera isolate GIL14 haplotype B unknown gene, partial sequence.
GenBankGU2755441e-162GU275544.1 Populus balsamifera isolate KUU07 haplotype A unknown gene, partial sequence.
GenBankGU2755451e-162GU275545.1 Populus balsamifera isolate KUU07 haplotype B unknown gene, partial sequence.
GenBankGU2755461e-162GU275546.1 Populus balsamifera isolate MGR10 haplotype A unknown gene, partial sequence.
GenBankGU2755471e-162GU275547.1 Populus balsamifera isolate MGR10 haplotype B unknown gene, partial sequence.
GenBankGU2755501e-162GU275550.1 Populus balsamifera isolate WHR03 haplotype A unknown gene, partial sequence.
GenBankGU2755521e-162GU275552.1 Populus balsamifera isolate FRE01 haplotype A unknown gene, partial sequence.
GenBankGU2755541e-162GU275554.1 Populus balsamifera isolate GAL12 haplotype A unknown gene, partial sequence.
GenBankGU2755561e-162GU275556.1 Populus balsamifera isolate HAY07 haplotype A unknown gene, partial sequence.
GenBankGU2755571e-162GU275557.1 Populus balsamifera isolate HAY07 haplotype B unknown gene, partial sequence.
GenBankGU2755581e-162GU275558.1 Populus balsamifera isolate LOV02 haplotype A unknown gene, partial sequence.
GenBankGU2755591e-162GU275559.1 Populus balsamifera isolate LOV02 haplotype B unknown gene, partial sequence.
GenBankGU2755601e-162GU275560.1 Populus balsamifera isolate RNA13 haplotype A unknown gene, partial sequence.
GenBankGU2755611e-162GU275561.1 Populus balsamifera isolate RNA13 haplotype B unknown gene, partial sequence.
GenBankGU2755621e-162GU275562.1 Populus balsamifera isolate STL13 haplotype A unknown gene, partial sequence.
GenBankGU2755631e-162GU275563.1 Populus balsamifera isolate STL13 haplotype B unknown gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024448785.10.0homeobox-leucine zipper protein ROC8-like
TrEMBLA0A2K1R6310.0A0A2K1R631_POPTR; Uncharacterized protein
STRINGXP_008457113.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10263398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32370.15e-98homeodomain GLABROUS 3