PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG030087.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ARF | ||||||||
Protein Properties | Length: 336aa MW: 38126.8 Da PI: 9.7758 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.5 | 6.3e-24 | 63 | 164 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k+lt sd++++g +++p++ ae+ ++++++ +l+ +d++ +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F ++++ + CCG030087.2 63 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftQQPPAQ--ELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQ 156 99*****************************86555544..8************************************************..889999 PP .EEEEE-S CS B3 92 lvvkvfrk 99 l+++++r+ CCG030087.2 157 LLLGIRRA 164 9****997 PP | |||||||
2 | Auxin_resp | 113.7 | 1.7e-37 | 189 | 273 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPr.astseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+v+YnPr as+seFv++++k++ka+ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k CCG030087.2 189 AAHAAATNSCFTVFYNPRwASPSEFVIPLSKYVKAVFhIRVSVGMRFRMLFETEESSVRRYMGTITGTSDLDPVRWPNSHWRSVK 273 79***************85899************98659*******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.23E-49 | 48 | 192 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.3E-42 | 56 | 178 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.11E-21 | 62 | 163 | No hit | No description |
SMART | SM01019 | 1.3E-23 | 63 | 165 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.308 | 63 | 165 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.5E-22 | 63 | 164 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.1E-32 | 189 | 273 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MIGEKKCLNS ELWHACAGPL VSLPTVGSRV VYFPQGHSEQ QEQKETFLPL DLGMPSKQPT 60 NYFCKTLTAS DTSTHGGFSV PRRAAEKVFP PLDFTQQPPA QELIARDLHD VEWKFRHIFR 120 GQPKRHLLTT GWSVFVSAKR LVAGDSVLFI WNEKNQLLLG IRRATRPQTV MPSSVLSSDS 180 MHIGLLAAAA HAAATNSCFT VFYNPRWASP SEFVIPLSKY VKAVFHIRVS VGMRFRMLFE 240 TEESSVRRYM GTITGTSDLD PVRWPNSHWR SVKVGWDEST AGERQPRVSL WEIEPLTTFP 300 MYPSLFPLRL KRPWHPESSS LLGTFSLFKD MFDAFP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-129 | 5 | 294 | 48 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF6. Involved in fruit initiation. Acts as an inhibitor to stop further carpel development in the absence of fertilization and the generation of signals required to initiate fruit and seed development. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481, ECO:0000269|PubMed:16829592}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011038345.1 | 0.0 | PREDICTED: auxin response factor 8-like | ||||
Swissprot | Q9FGV1 | 0.0 | ARFH_ARATH; Auxin response factor 8 | ||||
TrEMBL | A0A2K1X7U1 | 0.0 | A0A2K1X7U1_POPTR; Auxin response factor | ||||
STRING | POPTR_0017s01870.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4958 | 28 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37020.2 | 0.0 | auxin response factor 8 |