PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG029977.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NAC

Protein Properties

Length: 398aa MW: 44828.2 Da PI: 7.2912

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG029977.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	115.2	6.7e-36	47	189	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk........ 79 lp+G++F+Ptd+el+ e+L++kve+k+ + + +i+ +i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+++ CCG029977.1 47 LPAGVKFDPTDQELI-EHLEAKVEAKDmrshplI---DefipTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKIQtecdlqgg 139 799**********.99*****5554442...143333666646******.555666799**************73334555544 PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g+++g+kk+Lv+y g+++++ekt+Wvmh+y+l CCG029977.1 140 ETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRRPEKTNWVMHQYHL 189 778********.999*******5547999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.23E-38	43	208	IPR003441	NAC domain
PROSITE profile	PS51005	32.704	47	208	IPR003441	NAC domain
Pfam	PF02365	1.9E-16	48	189	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence Send to blast
MTTKSNMASI SSSNLIDAKL EEHQLCGSKQ CPGCGHKLEG KPDWLGLPAG VKFDPTDQEL 60 IEHLEAKVEA KDMRSHPLID EFIPTIEGED GICYTHPEKL PGVTRDGLSR HFFHRPSKAY 120 TTGTRKRRKI QTECDLQGGE TRWHKTGKTR PVMVNGKQKG CKKILVLYTN FGKNRRPEKT 180 NWVMHQYHLG QLEEEKEGEL VVSKIFYQTQ PRQCNYTDRS ATIGEGSSEP SSRRDSGSGS 240 CSSKEIIPQR DEISGTGPVA VSISSCTALD IHQLKSDHFG FTPFRKSFDE VGIREASVAR 300 EASASGTCDE IQEQHQRPHH VAHDPHQQQQ LQQQHHHQTV HHQIATAAFH ISRPSHPIST 360 IISPPPLHHT SIILDEDPYN VSRLMLQNEI QEEFGDRK

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence Send to blast

MTTKSNMASI SSSNLIDAKL EEHQLCGSKQ CPGCGHKLEG KPDWLGLPAG VKFDPTDQEL  60
IEHLEAKVEA KDMRSHPLID EFIPTIEGED GICYTHPEKL PGVTRDGLSR HFFHRPSKAY  120
TTGTRKRRKI QTECDLQGGE TRWHKTGKTR PVMVNGKQKG CKKILVLYTN FGKNRRPEKT  180
NWVMHQYHLG QLEEEKEGEL VVSKIFYQTQ PRQCNYTDRS ATIGEGSSEP SSRRDSGSGS  240
CSSKEIIPQR DEISGTGPVA VSISSCTALD IHQLKSDHFG FTPFRKSFDE VGIREASVAR  300
EASASGTCDE IQEQHQRPHH VAHDPHQQQQ LQQQHHHQTV HHQIATAAFH ISRPSHPIST  360
IISPPPLHHT SIILDEDPYN VSRLMLQNEI QEEFGDRK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	3e-13	45	189	13	140	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB970795	0.0	AB970795.1 Populus tremula x Populus tremuloides PtxtNAC128 mRNA for NAC transcriptional factor, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011007271.1	0.0	PREDICTED: uncharacterized protein LOC105113004 isoform X3
Swissprot	Q9M0F8	1e-160	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	A0A3N7FZ63	0.0	A0A3N7FZ63_POPTR; Uncharacterized protein
STRING	POPTR_0006s15740.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4520	34	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	1e-135	NAC domain containing protein 75

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]