PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

CCG029961.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

GATA

Protein Properties

Length: 311aa MW: 34443.7 Da PI: 8.2853

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG029961.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	59.5	4.4e-19	181	214	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs C+tt+TplWR+gp+g+k+LCnaCG+++rk + CCG029961.1 181 CSDCNTTSTPLWRSGPRGPKSLCNACGIRQRKAR 214 *******************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57716	5.7E-13	175	215	No hit	No description
SMART	SM00401	9.9E-22	175	226	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	1.2E-15	179	214	IPR013088	Zinc finger, NHR/GATA-type
PROSITE profile	PS50114	12.73	179	211	IPR000679	Zinc finger, GATA-type
CDD	cd00202	7.03E-12	180	208	No hit	No description
PROSITE pattern	PS00344	0	181	206	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	9.2E-17	181	214	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MTPVCLNLAS SSFPFVDLKE EQHLQLFLSP HQAATSLSGP TNFFNTTHDQ RESKLAESRQ 60 HDDHEARTAC FNCMVDKYSI SLGRSSDHKL FPSPSFQPVV NDDDDSNFHK LFSSKTEDGT 120 EGSGDSSVNW MPSRMTTMQE MTNSNRSETD HQPMKFMLKF HNQQCQNNDI NSSSNGNIRV 180 CSDCNTTSTP LWRSGPRGPK SLCNACGIRQ RKARRAMAAA ENGAVISVEA SSSTKSKVNS 240 KVKKLRTSHV VQGKKLSNKP PNPPLQSQKE LCFKNLALSL SKNPALIQVL PHDVEEAAIL 300 LMELSCGFIH S

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF148510	0.0	EF148510.1 Populus trichocarpa x Populus deltoides clone WS0131_P03 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011010724.1	0.0	PREDICTED: putative GATA transcription factor 22
TrEMBL	A0A2K1WW78	0.0	A0A2K1WW78_POPTR; Uncharacterized protein
STRING	POPTR_0006s24560.1	1e-140	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1992	34	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G26150.1	2e-15	cytokinin-responsive gata factor 1