PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG029901.2
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 267aa    MW: 31033 Da    PI: 8.5939
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG029901.2genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.21.2e-151063148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48
                     +g+WT++Ed ll++ v+++G ++W+ Ia+  g      k Rt+k+c++rw +yl
      CCG029901.2 10 KGPWTEQEDILLINFVNLFGDRRWDFIAKVSGlkvagdKYRTGKSCRLRWVNYL 63
                     79**************************************************97 PP
2Myb_DNA-binding53.36.1e-1769113147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T++E+ l +++++++G++ W++Iar+++ gRt++++k++w+++
      CCG029901.2  69 RGKMTPQEERLVLELHARWGNR-WSRIARKLP-GRTDNEIKNYWRTH 113
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.738163IPR017930Myb domain
SuperFamilySSF466891.73E-279110IPR009057Homeodomain-like
SMARTSM007175.8E-15965IPR001005SANT/Myb domain
PfamPF002492.1E-141063IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.9E-201170IPR009057Homeodomain-like
CDDcd001671.62E-101263No hitNo description
PROSITE profilePS5129425.53264118IPR017930Myb domain
SMARTSM007176.8E-1668116IPR001005SANT/Myb domain
PfamPF002491.4E-1569113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-2371117IPR009057Homeodomain-like
CDDcd001672.17E-1171113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MKMMPDETRK GPWTEQEDIL LINFVNLFGD RRWDFIAKVS GLKVAGDKYR TGKSCRLRWV  60
NYLHPGLKRG KMTPQEERLV LELHARWGNR WSRIARKLPG RTDNEIKNYW RTHTRKKAQE  120
RKSVASXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  180
XXXPSAGKNG EAVQGGEKGY SMDDIWRDIE NTIEPVCDGF SEEGCNFSYP SLASPSWEYC  240
PDMLWSVSVE ESKMFLPYDD GTVLLTG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A7e-2771181105MYB PROTO-ONCOGENE PROTEIN
1h88_C8e-27111849159MYB PROTO-ONCOGENE PROTEIN
1h89_C8e-27111849159MYB PROTO-ONCOGENE PROTEIN
1h8a_C7e-27111818128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16531467}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011042043.14e-78PREDICTED: transcription factor MYB59-like
SwissprotQ4JL841e-69MYB59_ARATH; Transcription factor MYB59
TrEMBLB9HPK93e-73B9HPK9_POPTR; Uncharacterized protein
STRINGPOPTR_0009s03240.15e-74(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43783359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.35e-72myb domain protein 59
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Hickman R, et al.
    Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
    Plant Cell, 2017. 29(9): p. 2086-2105
    [PMID:28827376]