PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

FAR1

Protein Properties

Length: 749aa MW: 86546.9 Da PI: 7.3516

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG029774.2	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	86.5	3.9e-27	28	114	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY++YAk+vGF + k +s++s+ ++e+++++f C ++g++++++++ ++r++ ++gCka+++vk++++gkw+++++++eHnHel p CCG029774.2 28 SFYKDYAKSVGFGTAKLSSRRSRSSKEFIDAKFSCIRYGNKQQSDDA----INPRPSPKIGCKASMHVKRRQNGKWYIYSFVKEHNHELLP 114 5**************************************999877....9**********************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.3E-25	28	114	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.2E-29	227	320	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.769	507	543	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	5.4E-9	515	541	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.4E-8	518	545	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 749 aa Download sequence Send to blast
MDSSVITGST IPEPRDDIEF ESHEAAYSFY KDYAKSVGFG TAKLSSRRSR SSKEFIDAKF 60 SCIRYGNKQQ SDDAINPRPS PKIGCKASMH VKRRQNGKWY IYSFVKEHNH ELLPAQVHFF 120 RSHRNDDPLK NDIRIRRRKN PSSVSKLFGA YQNVDCLEGY MRNQHDKGRS LVLESGDAQV 180 LLDLFMHMQE ENPKFFYAVD LNEEHRLRNL FWVDTKGMED YSNFDDVVCF DTTYFTNKYK 240 IPLVFFIGVN HHIQPTLLGC ALIADETVYT FVWLMQTWFM AMGERAPQLM LTDQNNALKA 300 AIGAVFPKTC HCFCLWHILE KIPRQLGYLS PWHDNFMVKF NKCIFKSWTE EQFEKRWWKL 360 LDKFNLREVE WVQSLYGDRK YWVPTFMRDV SFAGLSTMSR SESLASSYDK YVHAETSMRE 420 FIEQYKSILE DRYEEEAKAD FDAWHETAEL KSPSPFEKQM SLVYTHEIFR KFQVEVLGAA 480 ACHLKKESED ETTTMYNVKD FEDSQNYVVE WNETKSDIYC SCRSFEYKGY LCRHAIVVLQ 540 MSGVFSIPPK YVLQRWTNAA LSRHPISERL DEVQTKVRRY NDLCRRAIIL GEEGSLSQES 600 YNIALCAIRE ALKQCASLTN SAETSACPNT SGSIEEENQY RNASKERALD LQVTGADKAT 660 RRAGAANTKE SNHSSAVKKG KQVTRSGDVN VGGQEGFHLM GISDLGPAQS HNMMPAQLQN 720 AVPTVFHNIM PPQFQNIAST HLHETRLPR

Sequence ? help Back to Top

Protein Sequence Length: 749 aa Download sequence Send to blast

MDSSVITGST IPEPRDDIEF ESHEAAYSFY KDYAKSVGFG TAKLSSRRSR SSKEFIDAKF  60
SCIRYGNKQQ SDDAINPRPS PKIGCKASMH VKRRQNGKWY IYSFVKEHNH ELLPAQVHFF  120
RSHRNDDPLK NDIRIRRRKN PSSVSKLFGA YQNVDCLEGY MRNQHDKGRS LVLESGDAQV  180
LLDLFMHMQE ENPKFFYAVD LNEEHRLRNL FWVDTKGMED YSNFDDVVCF DTTYFTNKYK  240
IPLVFFIGVN HHIQPTLLGC ALIADETVYT FVWLMQTWFM AMGERAPQLM LTDQNNALKA  300
AIGAVFPKTC HCFCLWHILE KIPRQLGYLS PWHDNFMVKF NKCIFKSWTE EQFEKRWWKL  360
LDKFNLREVE WVQSLYGDRK YWVPTFMRDV SFAGLSTMSR SESLASSYDK YVHAETSMRE  420
FIEQYKSILE DRYEEEAKAD FDAWHETAEL KSPSPFEKQM SLVYTHEIFR KFQVEVLGAA  480
ACHLKKESED ETTTMYNVKD FEDSQNYVVE WNETKSDIYC SCRSFEYKGY LCRHAIVVLQ  540
MSGVFSIPPK YVLQRWTNAA LSRHPISERL DEVQTKVRRY NDLCRRAIIL GEEGSLSQES  600
YNIALCAIRE ALKQCASLTN SAETSACPNT SGSIEEENQY RNASKERALD LQVTGADKAT  660
RRAGAANTKE SNHSSAVKKG KQVTRSGDVN VGGQEGFHLM GISDLGPAQS HNMMPAQLQN  720
AVPTVFHNIM PPQFQNIAST HLHETRLPR

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC216409	0.0	AC216409.1 Populus trichocarpa clone POP024-J08, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011042055.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 4 isoform X1
Swissprot	Q6NQJ7	0.0	FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBL	A0A2K2BA94	0.0	A0A2K2BA94_POPTR; Uncharacterized protein
TrEMBL	A0A385JI49	0.0	A0A385JI49_POPTO; FAR1-related sequence 4
STRING	POPTR_0003s22300.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.1	0.0	FAR1-related sequence 4

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]