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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | CCG029762.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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| Family | WRKY | ||||||||
| Protein Properties | Length: 334aa MW: 37672 Da PI: 5.2944 | ||||||||
| Description | WRKY family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | WRKY | 98.2 | 5.2e-31 | 165 | 223 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
+D ++WrKYGqK++kgs++prsYYrC+s gC ++k+vers++dp++++itY+ eH h
CCG029762.1 165 SDMWAWRKYGQKPIKGSPYPRSYYRCSSLkGCLARKQVERSSTDPSIFIITYTAEHSHA 223
79*************************998****************************6 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:2.20.25.80 | 5.3E-32 | 150 | 225 | IPR003657 | WRKY domain |
| SuperFamily | SSF118290 | 3.53E-26 | 158 | 225 | IPR003657 | WRKY domain |
| PROSITE profile | PS50811 | 31.892 | 159 | 225 | IPR003657 | WRKY domain |
| SMART | SM00774 | 4.1E-36 | 164 | 224 | IPR003657 | WRKY domain |
| Pfam | PF03106 | 2.9E-25 | 166 | 222 | IPR003657 | WRKY domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 334 aa Download sequence Send to blast |
MSSESACMEE SWDLQAVVRS GCSTNYQEFA NNMNNPPSLF APLSFDTDEL LISQETYETP 60 TDFDELDGLY RPFYPVLHQT LNSSQNNILG TCTNTTPIGT CTNTTSMSVR KEVKERQKVQ 120 KKKPLSEPAT CPNSSTDATS TAKSKRRENQ HKRVVQHVKE DGLSSDMWAW RKYGQKPIKG 180 SPYPRSYYRC SSLKGCLARK QVERSSTDPS IFIITYTAEH SHARPTRRSS LAGSTRIKRD 240 AIPKGTTPSI EPNMPTIKDQ RSPNFDGLIS PTTPSMTSIE DEFVQNLSNK NEELLDHGQI 300 LEENESKEIF FPDVVFSDDL FPTLEDLEGF LLDQ |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5w3x_B | 6e-19 | 165 | 226 | 17 | 80 | Disease resistance protein RRS1 |
| 5w3x_D | 6e-19 | 165 | 226 | 17 | 80 | Disease resistance protein RRS1 |
| Search in ModeBase | ||||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_011026978.1 | 0.0 | PREDICTED: WRKY transcription factor 22-like | ||||
| TrEMBL | A0A3N7FWR6 | 0.0 | A0A3N7FWR6_POPTR; Uncharacterized protein | ||||
| STRING | POPTR_0001s09900.1 | 0.0 | (Populus trichocarpa) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF6217 | 31 | 50 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G52830.1 | 8e-38 | WRKY DNA-binding protein 27 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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