PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG029727.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 349aa    MW: 38648.6 Da    PI: 5.0531
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG029727.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.93e-19128178155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  ++++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ +l+g
  CCG029727.1 128 KKFRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTYDTAEEAAMVYDNAAIQLRG 178
                  59********.**********72....45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.32E-32128185No hitNo description
PfamPF008472.2E-12129178IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-21129185IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-29129185IPR001471AP2/ERF domain
SMARTSM003803.2E-36129192IPR001471AP2/ERF domain
PROSITE profilePS5103223.367129186IPR001471AP2/ERF domain
PRINTSPR003673.8E-10130141IPR001471AP2/ERF domain
PRINTSPR003673.8E-10152168IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048364Biological Processroot development
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MDHPVKFSEH RNQTKLTTSF LSNPVQHSKP PKIVRISVTD TYATDSSSDE ENEVATGSSH  60
KRHVTRVKKF VNEISIEPPS SSRRADCVPV DTVLGTRPSR SARKKVGDNG SRTRRFPSKA  120
TATAVVGKKF RGVRQRPWGK WAAEIRDPLR RVRLWLGTYD TAEEAAMVYD NAAIQLRGPD  180
ALTNFITPPA RCSPLAATSG YISGDESNSN YNINNDGVVN VSSPISVLRF SEEAETQSVS  240
SSREIRDTGN EVPEVKEDSC VSENLSDSSE YNSSIDSLFP PTADICELRS SMRNIFEETS  300
FADGGFLKDD DFRDMDLDLD FGFGLSSWNV QDHFQDIGDL FGSDSLIAF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-20127200369ATERF1
3gcc_A2e-20127200369ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00027PBMTransfer from AT4G23750Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011026933.10.0PREDICTED: ethylene-responsive transcription factor CRF1
TrEMBLB9GL910.0B9GL91_POPTR; Uncharacterized protein
STRINGPOPTR_0001s10300.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11140.12e-47cytokinin response factor 1