PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG029673.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ARF
Protein Properties Length: 694aa    MW: 76466 Da    PI: 6.2119
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG029673.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.18.9e-15139228198
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  f+kvlt sd++++g +++ +k+a+e+  +      l +++++  +  v     ++++r++lt+GW+ Fv +++L +gD++vF   + +++el+v+v+r
  CCG029673.1 139 FCKVLTASDTSTHGGFSVLRKHATECLPP------LDMTQPTPTQELVAKDLHGQPRRHLLTTGWSTFVTSKRLVAGDSFVFL--RGEDGELRVGVRR 228
                  99************************422......44444444444444434999****************************..4499*******98 PP
2Auxin_resp103.33e-34254333183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  a+ha+st + F v+Y+Pr+  s+F+++++k+++a+++k+ vGmRfkm+fe+eds+ rr+sGt+vgv+d++p +W++SkWrsLk
  CCG029673.1 254 ASHAVSTLTLFVVYYKPRT--SQFIISLNKYLEAVSNKFVVGMRFKMRFEGEDSPDRRFSGTIVGVEDFSP-HWNDSKWRSLK 333
                  689***************6..9*************************************************.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.44E-31129257IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.6E-30130243IPR015300DNA-binding pseudobarrel domain
CDDcd100172.40E-14137228No hitNo description
SMARTSM010199.0E-13139230IPR003340B3 DNA binding domain
PfamPF023621.1E-12139228IPR003340B3 DNA binding domain
PROSITE profilePS508638.966190230IPR003340B3 DNA binding domain
PfamPF065071.8E-31254333IPR010525Auxin response factor
PfamPF023092.8E-13559670IPR033389AUX/IAA domain
SuperFamilySSF542772.26E-14575658No hitNo description
PROSITE profilePS5174526.82582663IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MMAMNRGIGG GGGGGGGSFS QGNSEGEGCG GDDLYTELWK ACAGPLVDVP KRGERVFYFP  60
QGHMEQLEAS TNQELNQRIP LFNLPSKILC RVIHTQLLAE QDTDEVYAQI TLIPESDQIE  120
PTSPDSSSSE PPRPTVHSFC KVLTASDTST HGGFSVLRKH ATECLPPLDM TQPTPTQELV  180
AKDLHGQPRR HLLTTGWSTF VTSKRLVAGD SFVFLRGEDG ELRVGVRRVA CQQSSMPSSV  240
ISSQNMHLGV LATASHAVST LTLFVVYYKP RTSQFIISLN KYLEAVSNKF VVGMRFKMRF  300
EGEDSPDRRF SGTIVGVEDF SPHWNDSKWR SLKVQWDEPA PIPRPDRVSP WEIEPCVASV  360
PTNLSQPVTQ KNKRPRPPFE IPALDLSSTA STPWNSGLTQ SHDLTQLSVT GEGKSYENHI  420
MWHQKQTDVN GHSNSMSRTQ TEGGWLASPH VNVSQHLFQD AMEDSKSVSP WPVFSGYSTL  480
LSSKSKNDPI PDPSDKGRKS EVPSSYRLFG IDLVNHSSSS TPIEVPAQPM SICSGATEGH  540
VLGTLSAVDS DQKSEVSKEQ KPEQLQKSPK EIQSKQSSTS TRSRTKVQMQ GIAVGRAVDL  600
TMLKGYSQLL DELEQLFDIK GQLHPRDKWE IVYTDDEGDM MLVGDDPWAE FCNMVRRIYI  660
CSSQDVKRMG PGSKLPMLPI KGEGTVLSSD SAEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1652835513354Auxin response factor 1
4ldw_A1e-1652835513354Auxin response factor 1
4ldw_B1e-1652835513354Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1372376KRPRP
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011026848.10.0PREDICTED: LOW QUALITY PROTEIN: auxin response factor 9-like
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A2K2BUP00.0A0A2K2BUP0_POPTR; Auxin response factor
STRINGXP_002518850.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15113396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9